BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926461

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | proliferating cell nucl...   200    6e-51
  AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular ...   161    3e-39


> AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear 
antigen 2 | chr2:12649906-12651703 REVERSE LENGTH=1133
Length=1133

 Score =  200 bits (108),  Expect = 6e-51
 Identities = 122/129 (95%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  116  TGCTGAGTACCACTCAATTGTGAGAATGCCTTTTGGTGAATTTTCCAGGAAATGCAAAGA  175
            ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  495  TGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGA  554

Query  176  TCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGGGGTGAAGTTTTC  235
            ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  555  TCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTTC  614

Query  236  AACAGTAGG  244
            ||||| |||
Sbjct  615  AACAGCAGG  623


> AT1G07370.1 | Symbols: PCNA1, ATPCNA1 | proliferating cellular 
nuclear antigen 1 | chr1:2263140-2264551 FORWARD LENGTH=1025
Length=1025

 Score =  161 bits (87),  Expect = 3e-39
 Identities = 117/132 (89%), Gaps = 0/132 (0%)
 Strand=Plus/Plus

Query  104  GGGGATACATGCTGCTGAGTACCACTCAATTGTGAGAATGCCTTTTGGTGAATTTTCCAG  163
            ||| |||| || |||||||||||||||||| ||||| |||||||    ||| ||||||||
Sbjct  442  GGGAATACCTGATGCTGAGTACCACTCAATCGTGAGGATGCCTTCCAATGAGTTTTCCAG  501

Query  164  GAAATGCAAAGATCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGG  223
            ||  ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  502  GATTTGCAAAGATCTCAGTAGCATTGGTGACACAGTTGTGATCTCTGTGACTAAAGAAGG  561

Query  224  GGTGAAGTTTTC  235
             |||||||||||
Sbjct  562  CGTGAAGTTTTC  573



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14276040716


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5