BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926462
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:268... 732 0.0
> AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:26824677-26826748
FORWARD LENGTH=1543
Length=1543
Score = 732 bits (396), Expect = 0.0
Identities = 486/530 (92%), Gaps = 4/530 (1%)
Strand=Plus/Plus
Query 6 GAAGAAGCAGAGAGAATGGATTCGGTGGAGAAGGGATTGCTTGTGGTTAACGACGGAGAA 65
||||||| ||||||||||||||||| ||||||||| |||||||| || | |||| |||||
Sbjct 71 GAAGAAGAAGAGAGAATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCGACAGAGAA 130
Query 66 CAAGTAAACACGAAAGATGtttttttACGGGAGATGAAGAAACTTAGTTACATTGCCGGT 125
||||||||| |||||||| ||||| ||||| | |||||||||||||||||| ||||||
Sbjct 131 GAAGTAAACAAGAAAGATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTACATCGCCGGT 190
Query 126 CCGATGATTGCGGTGCACTCGTCTATGTATGTTCTTCAGGTGATCTCGATAATGATGGTT 185
||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 191 CCGATGATTGCAGTGAACTCGTCTATGTATGTTCTTCAGGTGATATCTATAATGATGGTT 250
Query 186 GGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCGGCGTC 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 251 GGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTC 310
Query 246 ACTGGTTTCAGCGTCGTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTGTGGTCAAGCT 305
|| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 311 ACCGGTTTCAGCGTCGTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATGTGGTCAAGCT 370
Query 306 AATGGAGCTAAGCAAT-TCGAGAAGCTTGGT-TATCATACTTACACAGGGATTGTCTCTT 363
|||||||||||||||| | |||||||||||| | ||||||||||||||| ||||||||||
Sbjct 371 AATGGAGCTAAGCAATAT-GAGAAGCTTGGTGT-TCATACTTACACAGGAATTGTCTCTT 428
Query 364 TGTTTCTTGTGTGTATTCCTTTGTCTGTGCTATGGAGTTACATGGGTGATATACTTTCTC 423
|||||||||||||||||||| | ||| | || |||| ||||| ||||||||||||||||
Sbjct 429 TGTTTCTTGTGTGTATTCCTCTCTCTCTTCTCTGGACATACATTGGTGATATACTTTCTC 488
Query 424 TTATTGGACAAGATCCTATGGTTGCTCAACAAGCAGGAAAGTATGCAACTTGGCTCATAC 483
|||||||||||||| |||||||||||||| |||| || |||| |||||||||||||||||
Sbjct 489 TTATTGGACAAGATGCTATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACTTGGCTCATAC 548
Query 484 CCGCGCTCTTTGGTTACGCTACTTTGCAACCGCTTGTTCGGTTTTTCCAA 533
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 549 CCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAA 598
Score = 706 bits (382), Expect = 0.0
Identities = 502/560 (90%), Gaps = 8/560 (1%)
Strand=Plus/Plus
Query 535 TTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGCGTTTCTTACTGGTTGAACGTGA 594
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 687 TTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGTGA 746
Query 595 CTGTTCTTGGATTATACATGACGTTTTCTTCCAGCTGTAGCAAGAGCCGTGCAGCGATCT 654
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 747 CTGTTCTTGGATTATACATGACGTTTTCTTCTAGCTGTAGCAAGAGCCGTGCAACTATCT 806
Query 655 CCATGAGTTTGTTTAAAGGAATGAGAGAGTTTTTCCGGTTTGGAATCCCATCTGCGTCTA 714
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 807 CCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTTGGAATCCCATCTGCATCTA 866
Query 715 TGATTTGCCTCGAGTGGTGGTCATTCGAATTTCT-GCTCTTACTCTCTGGGATCTTACCA 773
|||||||||| ||||||||||||||||||||| | | || | |||||||| || ||||||
Sbjct 867 TGATTTGCCTTGAGTGGTGGTCATTCGAATTTTTAG-TCCTGCTCTCTGGTATTTTACCA 925
Query 774 AATCCGAAGCTAGAAGCCTCTGTTCTCTCAATCTGTCTATCAACAATCAA-CATCGT-GT 831
|||||||||||||||||||||||||||||| ||||||| |||||| ||| | || | ||
Sbjct 926 AATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACA--CAATCCTCCTTGT 983
Query 832 ACCAAATAGCAGATAGTCTCGCCGCAGCAGCAAGTACAAGAGTTGCAAACGAATTAGGAG 891
||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 984 ACCAAATCCCAGAGAGTCTCGGTGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAG 1043
Query 892 CTGGAAAACCAAAACAAGCTCGAATGGCGGTTTATACAGTGATGGTCATTACAGGTGTAG 951
||||||| || ||||||||||||||||||||||| |||| |||||| || ||||||||||
Sbjct 1044 CTGGAAACCCGAAACAAGCTCGAATGGCGGTTTACACAGCGATGGTTATAACAGGTGTAG 1103
Query 952 AATCAATAATGGTCAGCGCAATAGTTTTTAGTGCAAGAAACGT-TTATGGATACATATTC 1010
||||||||||||| | |||||||| ||| |||||||||| || || ||| ||| |||||
Sbjct 1104 AATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATT-TGGTTACCTATTC 1162
Query 1011 AGCTCTGAAACCGAAGTAGTGGTTTATGTAAGATCAATGGCTCCATTGGTTGCTTTATCG 1070
|| |||||||| ||||| || | ||||||| ||||||||||||| || || ||||||||
Sbjct 1163 AGTTCTGAAACTGAAGTTGTAGACTATGTAAAATCAATGGCTCCACTGCTTTCTTTATCG 1222
Query 1071 GTCATATTCGATGCTCTTCA 1090
|||||||||||||| |||||
Sbjct 1223 GTCATATTCGATGCCCTTCA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5