BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926462 Length=1228 Score E Sequences producing significant alignments: (Bits) Value AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:268... 732 0.0 > AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:26824677-26826748 FORWARD LENGTH=1543 Length=1543 Score = 732 bits (396), Expect = 0.0 Identities = 486/530 (92%), Gaps = 4/530 (1%) Strand=Plus/Plus Query 6 GAAGAAGCAGAGAGAATGGATTCGGTGGAGAAGGGATTGCTTGTGGTTAACGACGGAGAA 65 ||||||| ||||||||||||||||| ||||||||| |||||||| || | |||| ||||| Sbjct 71 GAAGAAGAAGAGAGAATGGATTCGGCGGAGAAGGGCTTGCTTGTTGTGAGCGACAGAGAA 130 Query 66 CAAGTAAACACGAAAGATGtttttttACGGGAGATGAAGAAACTTAGTTACATTGCCGGT 125 ||||||||| |||||||| ||||| ||||| | |||||||||||||||||| |||||| Sbjct 131 GAAGTAAACAAGAAAGATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTACATCGCCGGT 190 Query 126 CCGATGATTGCGGTGCACTCGTCTATGTATGTTCTTCAGGTGATCTCGATAATGATGGTT 185 ||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||||| Sbjct 191 CCGATGATTGCAGTGAACTCGTCTATGTATGTTCTTCAGGTGATATCTATAATGATGGTT 250 Query 186 GGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCGGCGTC 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 251 GGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTTCTGCAGCGTC 310 Query 246 ACTGGTTTCAGCGTCGTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTGTGGTCAAGCT 305 || |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 311 ACCGGTTTCAGCGTCGTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATGTGGTCAAGCT 370 Query 306 AATGGAGCTAAGCAAT-TCGAGAAGCTTGGT-TATCATACTTACACAGGGATTGTCTCTT 363 |||||||||||||||| | |||||||||||| | ||||||||||||||| |||||||||| Sbjct 371 AATGGAGCTAAGCAATAT-GAGAAGCTTGGTGT-TCATACTTACACAGGAATTGTCTCTT 428 Query 364 TGTTTCTTGTGTGTATTCCTTTGTCTGTGCTATGGAGTTACATGGGTGATATACTTTCTC 423 |||||||||||||||||||| | ||| | || |||| ||||| |||||||||||||||| Sbjct 429 TGTTTCTTGTGTGTATTCCTCTCTCTCTTCTCTGGACATACATTGGTGATATACTTTCTC 488 Query 424 TTATTGGACAAGATCCTATGGTTGCTCAACAAGCAGGAAAGTATGCAACTTGGCTCATAC 483 |||||||||||||| |||||||||||||| |||| || |||| ||||||||||||||||| Sbjct 489 TTATTGGACAAGATGCTATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACTTGGCTCATAC 548 Query 484 CCGCGCTCTTTGGTTACGCTACTTTGCAACCGCTTGTTCGGTTTTTCCAA 533 |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 549 CCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAA 598 Score = 706 bits (382), Expect = 0.0 Identities = 502/560 (90%), Gaps = 8/560 (1%) Strand=Plus/Plus Query 535 TTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGCGTTTCTTACTGGTTGAACGTGA 594 ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| Sbjct 687 TTGGTCTTGGAAGCCTCGGTGCAGCTATTGCGATCGGTGTTTCTTACTGGCTAAACGTGA 746 Query 595 CTGTTCTTGGATTATACATGACGTTTTCTTCCAGCTGTAGCAAGAGCCGTGCAGCGATCT 654 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| Sbjct 747 CTGTTCTTGGATTATACATGACGTTTTCTTCTAGCTGTAGCAAGAGCCGTGCAACTATCT 806 Query 655 CCATGAGTTTGTTTAAAGGAATGAGAGAGTTTTTCCGGTTTGGAATCCCATCTGCGTCTA 714 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 807 CCATGAGTTTGTTTGAAGGAATGGGAGAGTTTTTCCGGTTTGGAATCCCATCTGCATCTA 866 Query 715 TGATTTGCCTCGAGTGGTGGTCATTCGAATTTCT-GCTCTTACTCTCTGGGATCTTACCA 773 |||||||||| ||||||||||||||||||||| | | || | |||||||| || |||||| Sbjct 867 TGATTTGCCTTGAGTGGTGGTCATTCGAATTTTTAG-TCCTGCTCTCTGGTATTTTACCA 925 Query 774 AATCCGAAGCTAGAAGCCTCTGTTCTCTCAATCTGTCTATCAACAATCAA-CATCGT-GT 831 |||||||||||||||||||||||||||||| ||||||| |||||| ||| | || | || Sbjct 926 AATCCGAAGCTAGAAGCCTCTGTTCTCTCAGTCTGTCTTTCAACA--CAATCCTCCTTGT 983 Query 832 ACCAAATAGCAGATAGTCTCGCCGCAGCAGCAAGTACAAGAGTTGCAAACGAATTAGGAG 891 ||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 984 ACCAAATCCCAGAGAGTCTCGGTGCAGCAGCAAGTACAAGAGTTGCAAACGAGTTAGGAG 1043 Query 892 CTGGAAAACCAAAACAAGCTCGAATGGCGGTTTATACAGTGATGGTCATTACAGGTGTAG 951 ||||||| || ||||||||||||||||||||||| |||| |||||| || |||||||||| Sbjct 1044 CTGGAAACCCGAAACAAGCTCGAATGGCGGTTTACACAGCGATGGTTATAACAGGTGTAG 1103 Query 952 AATCAATAATGGTCAGCGCAATAGTTTTTAGTGCAAGAAACGT-TTATGGATACATATTC 1010 ||||||||||||| | |||||||| ||| |||||||||| || || ||| ||| ||||| Sbjct 1104 AATCAATAATGGTGGGTGCAATAGTCTTTGGTGCAAGAAATGTATT-TGGTTACCTATTC 1162 Query 1011 AGCTCTGAAACCGAAGTAGTGGTTTATGTAAGATCAATGGCTCCATTGGTTGCTTTATCG 1070 || |||||||| ||||| || | ||||||| ||||||||||||| || || |||||||| Sbjct 1163 AGTTCTGAAACTGAAGTTGTAGACTATGTAAAATCAATGGCTCCACTGCTTTCTTTATCG 1222 Query 1071 GTCATATTCGATGCTCTTCA 1090 |||||||||||||| ||||| Sbjct 1223 GTCATATTCGATGCCCTTCA 1242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60341055090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5