BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926466
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71170.1 | Symbols: | 6-phosphogluconate dehydrogenase fami... 1332 0.0
AT1G71180.1 | Symbols: | 6-phosphogluconate dehydrogenase fami... 1099 0.0
> AT1G71170.1 | Symbols: | 6-phosphogluconate dehydrogenase family
protein | chr1:26830669-26832099 FORWARD LENGTH=1431
Length=1431
Score = 1332 bits (721), Expect = 0.0
Identities = 852/917 (93%), Gaps = 2/917 (0%)
Strand=Plus/Plus
Query 20 GAAATGGAGAGTCCA-TATTCGAAACTCATCGATCCATCCAAGACTCGAATTGGATGGAT 78
|||||||||| | || ||| ||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 2 GAAATGGAGACT-CAGTATCCGAAACTAATCGAACCATCCAAGACCCGAATTGGATGGAT 60
Query 79 TGGGATCGGGATAATGGGATCAGCCATGGTTTCTCATATCCTCGCCGCAGGCTATTCAGT 138
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGATCGGGATAATGGGATCAGCGATGGTTTCTCATATCCTCGCCGCAGGCTATTCAGT 120
Query 139 CACCGTCTACGCTCGCGATCTCCGGAAATCAAAGGATCTGCAAACCAAAGGAGCTCGCAT 198
|||||| || ||||||||||| || ||| |||||||||||||||||||||||| ||| |
Sbjct 121 CACCGTTTATGCTCGCGATCTTCGTAAAACAAAGGATCTGCAAACCAAAGGAGGTCGTAC 180
Query 199 AGCCAATAGCCCCAAAGAGTTAGCGGAGATGAGCGACGTTGTGTTCACGATTGTTGGAAA 258
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 181 CGCCAATAGCCCCAAAGAGTTAGGGGAGATGAGCGACGTTGTGTTCACGATCGTTGGAAA 240
Query 259 CTCTAACGATGTCCGATCGTTGCTTCTCGGTGAAGATGGTGTACTCGCTGGTCTTAATCC 318
|||||||||||| ||||||||||||| || || |||||||||||| |||||||||| ||
Sbjct 241 CTCTAACGATGTTAGATCGTTGCTTCTTGGGGATGATGGTGTACTCTCTGGTCTTAAACC 300
Query 319 CGGTGGAGTAACAGTGGATATGACTAGTAGCAAGCCGGGATTGGCGCGTGAGATACACGC 378
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 301 CGGTGGAGTAACAGTGGACATGACTAGTAGCAAGCCAGGATTGGCGCGTGAGATATACGC 360
Query 379 GGAGGCGAGGAGGAGGAATTGCTGGGCGGTGGATGCGCCGGTATCGGGTGGAGATGCCGG 438
|||||||||| ||||| |||||||||||||||||||||| |||||||||||||| || ||
Sbjct 361 GGAGGCGAGGCGGAGGGATTGCTGGGCGGTGGATGCGCCTGTATCGGGTGGAGACGCTGG 420
Query 439 AGCACGTGAGGGGAAGCTAACGATTTTCGCCGGCGGAGATTCTGAGATTGTGGAGTGGTT 498
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 421 AGCACGTGAGGGGAAGCTAACGATATTCGCCGGCGGAGATTCCGAGATTGTGGAGTGGTT 480
Query 499 ATCTCCGGTGATGAAAACGATGGGAATTGTGAGGTATATGGGAGAAGCAGGGAGTGGACA 558
||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 481 GGCTCCGGTGATGAAAACGATGGGAATTGTGAGGTTTATGGGAGGAGCTGGGAGTGGACA 540
Query 559 GAGCTGTAAGATTGGGAATCAGATTTGTGTAGGAAGCAACATGGTGGGATTAGCTGAAGG 618
||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 541 GAGCTGTAAAATTGGGAATCAGATTTGTGTTGGAAGCAACATGATTGGATTAGCTGAAGG 600
Query 619 GATTGTCTTTGCTGAGAAGGCGGGTTTAGATCCGGTGAAATGGCTTGATGCGGTCAAAGA 678
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 601 GATTGTGTTTGCTGAGAAGGCGGGTTTAGATCCGGTGAAATGGCTTGAGGCGGTTAAGGA 660
Query 679 CGGTGCGGCTGGATCTGCGGTTATGCGGCTTTTCGGGGAGATGATGACGGAGAGGGATTA 738
|||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 661 CGGTGCAGCTGGATCGGCGGTTATGCGGCTTTTCGGGGAGATGATGGCGGTGAGGGACTA 720
Query 739 TAAGGCGACGGGGTTTGCGGAGTACATGGTGAAAGATTTGGGAATGGCGGCGGAAGCAGC 798
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 721 TAAGGCGACGGGGTTTGCGGAGTATATGGTGAAAGATTTGGGAATGGCGGCGGAGGCGGC 780
Query 799 AACGGCGATGCCTGGAACTGCTTTGAACAAGCAGTTGTTCTCTGGAATGGTGGCAAATGG 858
|| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 781 AATGGCGATGCCTGGAACTGCTTTGAACAAGCAGTTGTTCACTGTAATGGTGGCAAATGG 840
Query 859 AGATGGGAAGTTAGGATTTCAAGGCGTCGTCTCTGTTATTAGGAGACTTAACGGCATATC 918
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 841 AGATGGGAAGTTAGGATTTCAAGGCGTCGTCGATGTTATTAGGAGACTTAACGGCTTATC 900
Query 919 CTGATGACACTAGTGTT 935
||||| | |||||||||
Sbjct 901 CTGATAAAACTAGTGTT 917
> AT1G71180.1 | Symbols: | 6-phosphogluconate dehydrogenase family
protein | chr1:26832335-26833709 FORWARD LENGTH=1375
Length=1375
Score = 1099 bits (595), Expect = 0.0
Identities = 834/947 (88%), Gaps = 26/947 (3%)
Strand=Plus/Plus
Query 1 TTCGTTCTCTGGAATCGCTGAAATGGAGAGTCCATATTCGAAACTCATCGATCCATCCAA 60
|||||||| ||||| | | |||||||||| ||||||| |||||||||||||||| || ||
Sbjct 42 TTCGTTCTGTGGAAACACAGAAATGGAGACTCCATATCCGAAACTCATCGATCCTTCAAA 101
Query 61 GACTCGAATTGGATGGATTGGGATCGGGATAATGGGATCAGCCATGGTTTCTCATATCCT 120
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 102 GACTCGAATAGGATGGATTGGCATCGGGATAATGGGATCGGCCATGGTTTCTCATATTAT 161
Query 121 CGCCGCAGGCTATTCAGTCACCGTCTACGCTCGCGATCTCCGGAAATCAAAGGATCTGCA 180
||||||||||||||| ||||| || ||||||||||| ||||||||| |||| ||||||||
Sbjct 162 CGCCGCAGGCTATTCTGTCACAGTTTACGCTCGCGACCTCCGGAAAACAAAAGATCTGCA 221
Query 181 AACCAAAGGAGCTCGCATAGCCAATAGCCCCAAAGAGTTAGCGGAGATGAGCGACGTTGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 AACCAAAGGAGCTCGCATAGCCAATAGCCCCAAAGAGTTAGCGGAGATGAGCGACGTTGT 281
Query 241 GTTCACGATTGTTGGAAACT-CTAACGATGTCCGATCGTTGCTTCTCGGTGAAGATGGTG 299
|||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||
Sbjct 282 GTTCACGATTGTTGGAAACTTC-AACGATGTCCGATCATTGCTTCTCGGTGACGATGGTG 340
Query 300 TACTCGCTGGTCTTAATCCCGGTGGAGTAACAGTGGATATGACTAGTAGCAAGCCGGGAT 359
||||| ||||||||| |||||||||||||||||||| |||||||||||||| || ||||
Sbjct 341 TACTCTCTGGTCTTACGCCCGGTGGAGTAACAGTGGACATGACTAGTAGCAAACCAGGAT 400
Query 360 TGGCGCGTGAGATACACGCGGAGGCGAGGAGGAGGAATTGCTGGGCGGTGGATGCGCCGG 419
|||||||||| |||||||| || |||||| | |||||||| |||||||||||||||||||
Sbjct 401 TGGCGCGTGAAATACACGCAGAAGCGAGGCGTAGGAATTGTTGGGCGGTGGATGCGCCGG 460
Query 420 TATCGGGTGGAGATGCCGGAGCACGTGAGGGGAAGCTAACGATTTTCGCCGGCGGAGATT 479
|||| |||||||| || |||||||| ||||||| | || ||||||||||||||||||||
Sbjct 461 TATCAGGTGGAGACGCTGGAGCACGAGAGGGGACGTTAGGGATTTTCGCCGGCGGAGATT 520
Query 480 CTGAGATTGTGGAGTGGTTATCTCCGGTGATGAA-AACGAT-GGGAATTGTGAGGTATAT 537
| ||||||||||||||||| || ||||||||||| || || |||| | || | |||||
Sbjct 521 CAGAGATTGTGGAGTGGTTGTCCCCGGTGATGAAGAAT-ATAGGGACT-GTTACTTATAT 578
Query 538 GGGAGAAGCAGGGAGTGGACAGAGCTGTAAGATTGGGAATCAGATTTG-TG-TAG-GAAG 594
|||||||||||||||||| || ||||| ||||| |||||||||||| | || | | || |
Sbjct 579 GGGAGAAGCAGGGAGTGGGCAAAGCTGCAAGATAGGGAATCAGATT-GCTGGT-GCGA-G 635
Query 595 CAACATGGTGGGA-TTAGCTGAAGGGATTGTCTTTGCTGAGAAGGCGGGTTTAGATCCGG 653
|||| |||| ||| || ||||||||||| || || |||||||| |||||||||||| | |
Sbjct 636 CAACCTGGTTGGACTT-GCTGAAGGGATAGTGTTCGCTGAGAAAGCGGGTTTAGATACAG 694
Query 654 TGAAATGGCTTGATGCGGTCAAAGACGGTGCGGCTGGATCTGCGGTTATGCGGCT-TTTC 712
|||||||||| || ||||| || || ||||| |||||||| |||||||||||||| |||
Sbjct 695 TGAAATGGCTCGAGGCGGTGAAGGATGGTGCAGCTGGATCGGCGGTTATGCGGCTGTTT- 753
Query 713 GGGGAGATGAT-GACGGAGAGGGATTATAAGGCGACGGGGTTTGCGGAGTACATGGTGAA 771
||||||||||| | | |||||||||||| |||||| || ||||||||||| ||||||||
Sbjct 754 GGGGAGATGATTGT-GAAGAGGGATTATAGGGCGACTGGCTTTGCGGAGTATATGGTGAA 812
Query 772 AGATTTGGGAATGGCGGCGGAAGCAGCAACGGCGATGCCTGGAACTGCTTTGAACAAGCA 831
||||||||||||||| || || | || |||||||||||| ||||| ||| ||||||
Sbjct 813 AGATTTGGGAATGGCTGCAGA-G--GC---GGCGATGCCTGGTGCTGCTCTGAGCAAGCA 866
Query 832 GTTGTTCTCTGGAATGGTGGCAAATGGAGATGGGAAGTTAGG-ATTTCAAGGCGTCGTCT 890
||||||| ||||||||||||| ||||||||||| |||||||| ||| |||||||||||||
Sbjct 867 GTTGTTCACTGGAATGGTGGCTAATGGAGATGGCAAGTTAGGTATT-CAAGGCGTCGTCT 925
Query 891 CTGTTATTAGGAGACTTAACGGCATATCCTGATGACACTAGTGTTGT 937
|||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 926 CTGTTATTAGAAGACTTAACGGCATATCCTGAAAACACTTGTGTTGT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5