BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926474
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B ... 1685 0.0
> AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B
| chr1:26852461-26854396 FORWARD LENGTH=1317
Length=1317
Score = 1685 bits (912), Expect = 0.0
Identities = 1041/1104 (94%), Gaps = 6/1104 (1%)
Strand=Plus/Plus
Query 18 AAAA-AATGGAGGGTTCGTCGTCGACCATTGCAAGGAAGACATGGGAATTGGAGAACAAC 76
|||| ||||||||||||||||||||| || |||||||||||||||||| | ||||||| |
Sbjct 94 AAAAGAATGGAGGGTTCGTCGTCGACGATAGCAAGGAAGACATGGGAACTAGAGAACAGC 153
Query 77 ATTCTAACAGTAGACTCACCTGATTCAACCTCCGATAACATCTTCTACTTCGACGATACT 136
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 154 ATTCTAACAGTAGACTCACCTGATTCAACCTCCGACAACATCTTCTACTACGACGATACT 213
Query 137 TCGCAAAGTAGGTTCCAGCAAGAGAAGCCATGGGAGAATGATCCTCACTACTTCAAACGA 196
|| || | |||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 214 TCACAGACTAGGTTCCAGCAAGAGAAACCGTGGGAGAATGATCCTCACTACTTTAAACGA 273
Query 197 GTCAAGATCTCAGCGCTTGCCCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGAACA 256
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 274 GTCAAGATCTCAGCGCTCGCTCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGTACA 333
Query 257 ATTGAAATAATGGGTCTTATGCAGGGTAAGACTGATGGTGATGCTATCATTGTTATGGAT 316
||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct 334 ATTGAAATAATGGGTCTTATGCAAGGTAAGACCGATGGTGATACTATCATTGTTATGGAT 393
Query 317 GCTTTCGCTTTGCCAGTGGAAGGAACTGAGACAAGGGTTAATGCTCAGGCTGATGCTTAT 376
||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 394 GCTTTTGCTTTACCAGTGGAAGGTACTGAGACAAGGGTTAATGCTCAGGATGATGCTTAT 453
Query 377 GAGTACATGGTTGAGTATTCTCAGACCAACAAGCTCGCGGGGCGGTTGGAGAATGTTGTT 436
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 454 GAGTACATGGTTGAGTATTCACAGACCAACAAGCTCGCGGGGCGGCTGGAGAATGTTGTT 513
Query 437 GGGTGGTATCACTCTCACCCTGGATATGGATGCTGGCTCTCGGGTATTGATGTTTCTACG 496
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 514 GGATGGTATCACTCTCACCCTGGATATGGATGCTGGCTCTCCGGTATTGATGTTTCTACG 573
Query 497 CAGAGGCTTAACCAACAGTATCAGGAGCCATTTTTAGCTGTTGTTATTGATCCCACAAGG 556
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CAGAGGCTTAACCAACAGCATCAGGAGCCATTTTTAGCTGTTGTTATTGATCCCACAAGG 633
Query 557 ACTGTTTCAGCTGGTAAGGTTGAGATTGGTGCATTCAGAACATACTC-AGAAGGATATAA 615
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 634 ACTGTTTCAGCTGGTAAGGTTGAGATTGGTGCTTTCAGAACATACTCTA-AAGGATATAA 692
Query 616 GCCTCCGGATGAACCTGTTTCCGAGTATCAGACTATTCCTTTAAATAAGATCGAGGACTT 675
|||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 693 GCCTCCAGATGAACCTGTTTCTGAGTATCAAACTATTCCTTTAAATAAGATTGAGGACTT 752
Query 676 TGGTGTTCACTGCAAGCAGTACTATTCATTAGATATCACTTATTTCAAGTCATCTCTTGA 735
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 753 TGGTGTTCACTGCAAACAGTACTATTCATTAGATGTCACTTATTTCAAGTCATCTCTTGA 812
Query 736 TTCTCATCTTCTGGATCTCCTATGGAACAAGTATTGGGTGAACACTCTTTCTTCTTCTCC 795
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 813 TTCTCACCTTCTGGATCTACTATGGAACAAGTACTGGGTGAACACTCTTTCTTCTTCTCC 872
Query 796 ACTGCTGGGCAATGGAGACTATGTTGCCGGACAAATATCAGACTTGGCTGAGAAGCTTGA 855
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 873 ACTGCTGGGTAATGGAGACTATGTTGCTGGACAAATATCAGACTTAGCTGAGAAGCTTGA 932
Query 856 GCAAGCGGAGAATCATCTGGCTCATTCTCGC---GGAGGAACTGTGCCATCATCCCTTCA 912
|||||| |||| |||||||| ||| |||||| |||||| ||||||||||||||||||
Sbjct 933 GCAAGCCGAGAGTCATCTGGTTCAGTCTCGCTTTGGAGGAGTTGTGCCATCATCCCTTCA 992
Query 913 TAGGAAAAAAGAGGATGAGTCTCAACTAACTAAGATAACTAGGGATAGCTCAAAGATAAC 972
|| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 993 TAAGAAAAAAGAGGATGAGTCTCAACTAACTAAGATAACTCGGGATAGCGCAAAGATAAC 1052
Query 973 TGTGGAACAGGTCCATGGACTAATGTCGCAGGTCATCAAAGATGTATTATTCAACTCAAT 1032
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1053 TGTGGAACAGGTCCATGGACTAATGTCGCAGGTCATAAAAGATGAATTATTCAACTCAAT 1112
Query 1033 ACGTCAGTCCAACAACAAATCTTCCACTGACTCGTCGGATCCAGAGCCTATGATTACACC 1092
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1113 GCGTCAGTCCAACAACAAATCTCCCACTGACTCGTCGGATCCAGACCCTATGATTACATA 1172
Query 1093 TTGAAGTTGCTCTTCTTTTGGTTT 1116
||||||||||||||||||||||||
Sbjct 1173 TTGAAGTTGCTCTTCTTTTGGTTT 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5