BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926477 Length=770 Score E Sequences producing significant alignments: (Bits) Value AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861657-... 1123 0.0 > AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861657-26863422 REVERSE LENGTH=940 Length=940 Score = 1123 bits (608), Expect = 0.0 Identities = 710/757 (94%), Gaps = 15/757 (2%) Strand=Plus/Plus Query 16 AGAAGATGATGAAGCAAGTTCGCACTTTGCTCTCCAGGAGCCTTTGTGACCAAAGTAAGT 75 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 27 AGAAGATGATGAAGCAAGCCCGCTCTTTGCTCTCCAGGAGCCTTTGTGACCAAAGTAAGT 86 Query 76 CACTTTTCGAAGAGAGAGTTAAAGCTTCGACGTTGCGTGGTTTTGCAAGCTGGTCAAGTT 135 |||||||| | |||||||||||||||||||||||||||||||||||| || Sbjct 87 CACTTTTC---------G---AAGCTTCGACGTTGCGTGGTTTTGCAAGCTGGTCAAATT 134 Query 136 CTTCTACGCCTGGACGTGGTTTCTCTGGTAAAGATGCTC-CAAAGCCTAGTGGTCGATTG 194 |||| || ||||||||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct 135 CTTCAACCCCTGGACGTGGATTCCCTGGTAAAGATGC-CGCAAAGCCTAGTGGTCGATTG 193 Query 195 TTCGCACCTTATTCTATTTTCAAGGGAAAAGCTGCTCTCTCTGTTGAACCTGTTCTTCCC 254 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 194 TTCGCACCTTATTCTATCTTCAAAGGAAAAGCTGCTCTCTCTGTTGAACCTGTTCTTCCC 253 Query 255 ACTTTCACCGAAATCGATTCGGGAAATCTTCGGATAGATCGTCGTGGATCCTTGATGATG 314 | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 254 AGTTTCACTGAAATCGATTCGGGAAATCTTCGGATAGATCGTCGTGGATCCTTAATGATG 313 Query 315 ACTTTTATGCCTGCTATTGGTGAGCGTAAGTACGACTGGGAAAAGAAACAGAAATTTGCT 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 ACTTTTATGCCTGCTATTGGTGAGCGTAAGTACGACTGGGAAAAGAAACAGAAATTTGCT 373 Query 375 TTGTCACCTACGGAAGTTGGATCCTTGATTAGCATGGGTTCCAAAGACAGCTCTGAGTTT 434 ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 374 TTGTCACCTACTGAAGTTGGATCCTTAATTAGCATGGGTTCCAAAGACAGCTCCGAGTTT 433 Query 435 TTCCATGACCCTTCCATGAAATCAAGTAATGCTGGTCAAGTCAGGAAGTCATTGTCAATT 494 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 434 TTCCATGACCCTTCCATGAAATCAAGTAATGCTGGTCAAGTCAGGAAGTCACTGTCAGTT 493 Query 495 AAGCCCCACGCAGATGGTAGCGGCTACTTCATCTCGTTGAGCGTAAACAATAGCATCCTC 554 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 494 AAGCCCCACGCAGATGGTAGCGGCTACTTCATCTCATTGAGCGTTAACAATAGCATCCTC 553 Query 555 AAAACCAATGACTATTTTGTGGTTCCTGTCACAAAAGCTGAATTTGCAGTGATGAAGACA 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 554 AAAACCAATGACTATTTTGTGGTTCCTGTCACAAAAGCTGAATTTGCAGTGATGAAGACA 613 Query 615 GCTTTTAGTTTTGCCCTTCCACACATCATGGGTTGGAATCGGTTAACAGGTCAAGGTAAT 674 |||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||| Sbjct 614 GCTTTTAGTTTTGCTCTTCCACACATCATGGGTTGGAATCGGTTAACTGGTCACGTTAAT 673 Query 675 ACTGAAGCGCTGCCACCGAGGAATCTTACTCATCTAAAGACCGATCCACAGTTAGAGCTG 734 |||||||| ||||| |||||||| || ||||||||||||| || ||||||||||||||| Sbjct 674 ACTGAAGCTCTGCCGTCGAGGAATGTTTCTCATCTAAAGACTGAACCACAGTTAGAGCTG 733 Query 735 GAGTGGGATAAATGAACTGATG-GAGTAGTAGGAACG 770 |||||||||||||||| ||||| |||||||||||||| Sbjct 734 GAGTGGGATAAATGAAATGATGAGAGTAGTAGGAACG 770 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37424439515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5