BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926477
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861657-... 1123 0.0
> AT1G71260.1 | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861657-26863422
REVERSE LENGTH=940
Length=940
Score = 1123 bits (608), Expect = 0.0
Identities = 710/757 (94%), Gaps = 15/757 (2%)
Strand=Plus/Plus
Query 16 AGAAGATGATGAAGCAAGTTCGCACTTTGCTCTCCAGGAGCCTTTGTGACCAAAGTAAGT 75
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 27 AGAAGATGATGAAGCAAGCCCGCTCTTTGCTCTCCAGGAGCCTTTGTGACCAAAGTAAGT 86
Query 76 CACTTTTCGAAGAGAGAGTTAAAGCTTCGACGTTGCGTGGTTTTGCAAGCTGGTCAAGTT 135
|||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 87 CACTTTTC---------G---AAGCTTCGACGTTGCGTGGTTTTGCAAGCTGGTCAAATT 134
Query 136 CTTCTACGCCTGGACGTGGTTTCTCTGGTAAAGATGCTC-CAAAGCCTAGTGGTCGATTG 194
|||| || ||||||||||| ||| ||||||||||||| | ||||||||||||||||||||
Sbjct 135 CTTCAACCCCTGGACGTGGATTCCCTGGTAAAGATGC-CGCAAAGCCTAGTGGTCGATTG 193
Query 195 TTCGCACCTTATTCTATTTTCAAGGGAAAAGCTGCTCTCTCTGTTGAACCTGTTCTTCCC 254
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 194 TTCGCACCTTATTCTATCTTCAAAGGAAAAGCTGCTCTCTCTGTTGAACCTGTTCTTCCC 253
Query 255 ACTTTCACCGAAATCGATTCGGGAAATCTTCGGATAGATCGTCGTGGATCCTTGATGATG 314
| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 254 AGTTTCACTGAAATCGATTCGGGAAATCTTCGGATAGATCGTCGTGGATCCTTAATGATG 313
Query 315 ACTTTTATGCCTGCTATTGGTGAGCGTAAGTACGACTGGGAAAAGAAACAGAAATTTGCT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ACTTTTATGCCTGCTATTGGTGAGCGTAAGTACGACTGGGAAAAGAAACAGAAATTTGCT 373
Query 375 TTGTCACCTACGGAAGTTGGATCCTTGATTAGCATGGGTTCCAAAGACAGCTCTGAGTTT 434
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 374 TTGTCACCTACTGAAGTTGGATCCTTAATTAGCATGGGTTCCAAAGACAGCTCCGAGTTT 433
Query 435 TTCCATGACCCTTCCATGAAATCAAGTAATGCTGGTCAAGTCAGGAAGTCATTGTCAATT 494
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 434 TTCCATGACCCTTCCATGAAATCAAGTAATGCTGGTCAAGTCAGGAAGTCACTGTCAGTT 493
Query 495 AAGCCCCACGCAGATGGTAGCGGCTACTTCATCTCGTTGAGCGTAAACAATAGCATCCTC 554
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 494 AAGCCCCACGCAGATGGTAGCGGCTACTTCATCTCATTGAGCGTTAACAATAGCATCCTC 553
Query 555 AAAACCAATGACTATTTTGTGGTTCCTGTCACAAAAGCTGAATTTGCAGTGATGAAGACA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AAAACCAATGACTATTTTGTGGTTCCTGTCACAAAAGCTGAATTTGCAGTGATGAAGACA 613
Query 615 GCTTTTAGTTTTGCCCTTCCACACATCATGGGTTGGAATCGGTTAACAGGTCAAGGTAAT 674
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 614 GCTTTTAGTTTTGCTCTTCCACACATCATGGGTTGGAATCGGTTAACTGGTCACGTTAAT 673
Query 675 ACTGAAGCGCTGCCACCGAGGAATCTTACTCATCTAAAGACCGATCCACAGTTAGAGCTG 734
|||||||| ||||| |||||||| || ||||||||||||| || |||||||||||||||
Sbjct 674 ACTGAAGCTCTGCCGTCGAGGAATGTTTCTCATCTAAAGACTGAACCACAGTTAGAGCTG 733
Query 735 GAGTGGGATAAATGAACTGATG-GAGTAGTAGGAACG 770
|||||||||||||||| ||||| ||||||||||||||
Sbjct 734 GAGTGGGATAAATGAAATGATGAGAGTAGTAGGAACG 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5