BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926483 Length=1340 Score E Sequences producing significant alignments: (Bits) Value AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biot... 1240 0.0 AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II a... 1027 0.0 > AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr1:26762339-26764623 FORWARD LENGTH=1945 Length=1945 Score = 1240 bits (671), Expect = 0.0 Identities = 768/814 (94%), Gaps = 9/814 (1%) Strand=Plus/Plus Query 521 CTTTCTTGAC-GGTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 579 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 917 CTTTCTTGACAGTTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 976 Query 580 TGTATACATTTGG-CCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGCATTTAGCT 638 ||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 977 TGTATACATTTGGTCCC-ACTTTTCGGGCAGAGAACTCTCACACTTCAAGGCATTTAGCT 1035 Query 639 GAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGACATGAACTGT 698 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1036 GAGTTCTGGATGGTTGAGCCTGAAATTGCTTTTGCAGATATACATGACGACATGAACTGT 1095 Query 699 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCCGATGACATG 758 ||||||||||||||||||||||||||||| |||||||| | || ||| |||||||||| Sbjct 1096 GCAGAGGCGTATGTGAAATACATGTGCAAATGGTTGATGGATAAATGTGGCGATGACATG 1155 Query 759 GATTTTATGGATAAGAATGTTGATGGGGGATGCACGAAAAGGCTAAAAATGGTTGCCGAA 818 || ||||||||||||| || || | ||||||||| ||||||||||| ||||||||| || Sbjct 1156 GAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTAAACATGGTTGCC-AA 1214 Query 819 A-CCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAG-GTACTTGAGAAAGCTGTAG 876 | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1215 AGCCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAGCG-ACTTGAGAAAGCTGTAG 1273 Query 877 CTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGGCCTCAGAGC 936 || |||||||||||||||||||||||||||||||| || ||| |||||||||||||||| Sbjct 1274 CTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTTGGCCTCAGAGC 1333 Query 937 ATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTTATAACTACC 996 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1334 ATGAAAGATACTTGACAGAGGTTGAGTTTGATCAAAAGCCAATAATTGTGTATAACTACC 1393 Query 997 CGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCA 1056 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1394 CGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCA 1453 Query 1057 TGGATGTCCTCGTTCCAAAGGTGGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGAT 1116 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1454 TGGATGTCCTTGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGAT 1513 Query 1117 ATGATGTCATCAGACAGAGGATCGAGGAGATGCGTCTACCAATAGAGCCATATGAGTGGT 1176 ||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 1514 ATGATGTTATCAAACAGAGGATCGAGGAGATGGGTCTACCAATGGAGCCATATGAGTGGT 1573 Query 1177 ACCTAGACTTGCGCCGATATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGAAC 1236 ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1574 ACCTAGACTTGCGTCGTTATGGAACAGTGAAGCATTGTGGATTTGGACTTGGCTTCGAAC 1633 Query 1237 GTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCT 1296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1634 GTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCT 1693 Query 1297 ATCCTGGAAAAGCTGATCTCTGATTTCCTCCTCT 1330 ||||||||||||||||||||||||| |||| ||| Sbjct 1694 ATCCTGGAAAAGCTGATCTCTGATT-CCTC-TCT 1725 Score = 743 bits (402), Expect = 0.0 Identities = 468/500 (94%), Gaps = 4/500 (1%) Strand=Plus/Plus Query 23 GAGTATCGAGCTTAACGTTGAGA-GTGTGATTGATGTGGGAACTGTTGATCCGACTAAGT 81 |||||| ||||||| |||||||| | ||||||| |||||||||||||||||||||| || Sbjct 357 GAGTATTGAGCTTAGCGTTGAGACG-GTGATTGCGGTGGGAACTGTTGATCCGACTACGT 415 Query 82 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGTTTCTCAGAGATTTGCTTCATCTTCGTT 141 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 416 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGTTTCTCAGAGATGTGCTTCATCTTCGTT 475 Query 142 CCAGGACTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCC 201 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | Sbjct 476 CTAGGACTAACTTGATCTCAGCAGTTGCAAGAATCCGTAACGCGCTTGCTTTTGCGACGC 535 Query 202 ACAGtttttttCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTG 261 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 536 ATAGTTTTTTTCAAGAACATAGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTG 595 Query 262 ATTGTGAAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGG 321 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 596 ATTGTGAAGGTGCTGGTGAAATGTTCCAAGTGACAACCTTGATCAATCACACTGAGAGGG 655 Query 322 TTGAGCAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGAC 381 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || | Sbjct 656 TTGAGCAGGATCTCATTGATAACCCTCCACCAACTGAGGCTGACGTTGAAGCGGCCAGGC 715 Query 382 TTATTGTCAAGGAGAGAGGTGAAGCTGT-GTCGCGACTGAAAGCTGCCAAGGCAAGCAAG 440 |||||||||||||||||||||||||||| | ||| ||| |||| ||||||||| |||||| Sbjct 716 TTATTGTCAAGGAGAGAGGTGAAGCTGTTG-CGCAACTTAAAGTTGCCAAGGCGAGCAAG 774 Query 441 GAAGAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTT 500 ||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||| Sbjct 775 GAAGAGATCACTGCTTCCGTTGCTCAACTAAGTGTAGCAAAGGCGAGTTTAGCTCATGTT 834 Query 501 GAAGAGAGGTCAAGGCTTAA 520 |||||||||| ||||||||| Sbjct 835 GAAGAGAGGTTAAGGCTTAA 854 > AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr5:22936543-22939036 FORWARD LENGTH=2016 Length=2016 Score = 1027 bits (556), Expect = 0.0 Identities = 739/826 (89%), Gaps = 18/826 (2%) Strand=Plus/Plus Query 521 CTTTCTTGAC-GGTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 579 |||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||| | Sbjct 1028 CTTTCTTGACAGTTTCCGGTCAATTACAAGTGGAGACCTATGCTTGTGCTCTTAGCAATG 1087 Query 580 TGTATACATTTGGCCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGCAT-TTAGCT 638 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| Sbjct 1088 TGTATACATTTGGCCCGACTTTCCGGGCAGAGAACTCTCACACTTCAAGGCATCTT-GCT 1146 Query 639 GAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGACATGAACTGT 698 ||||||||||||||||||||||| || |||||||||||| || | ||||||||||||||| Sbjct 1147 GAATTCTGGATGGTTGAGCCTGAGATTGCTTTTGCAGATCTAGAGGACGACATGAACTGT 1206 Query 699 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCCGATGACATG 758 |||||||||||||||||||||||||||||||||||| | |||| |||| || ||||||| Sbjct 1207 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGCTTGAGAAATGTTACGCTGACATG 1266 Query 759 GATTTTATGGATAAGAATGTT-GA-TGGGGGATGCA-CGAAAAGGCTAAAAATGGTTGCC 815 || |||||| ||||||| || || | ||||||| | | ||||||||| |||||||| Sbjct 1267 GAACTTATGGCTAAGAAT-TTCGACT-CAGGATGCATTG-ACAGGCTAAAATTGGTTGCC 1323 Query 816 GAAACCT-CGTTTAAGCGTGTAACATACACTGAAGCAATAGAGGTACTTGAGAAAGCTGT 874 | || ||||| |||| ||||||||||| ||||||||||| |||||||| ||||||| Sbjct 1324 TCTA-CTCCGTTTGGGCGTATAACATACACTAAAGCAATAGAGCTACTTGAGGAAGCTGT 1382 Query 875 AGCTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGGCCTCAGA 934 ||| ||||||| | | ||||||||||| |||||| || ||| ||||| ||||| || Sbjct 1383 GGCTAAAGGAAA-G--GAATTTGATAACAATGTGGAGTGGGGAATCGACTTAGCCTCGGA 1439 Query 935 GCATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTTATAACTA 994 ||||||||||||||||||||||||| || | |||||||||| | ||||| |||||||| Sbjct 1440 GCATGAAAGATACTTGACAGAGGTTCTGT-T--TCAAAAGCCACTTATTGTCTATAACTA 1496 Query 995 CCCGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGC 1054 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 CCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGC 1556 Query 1055 CATGGATGTCCTCGTTCCAAAGGTGGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACG 1114 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1557 CATGGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACG 1616 Query 1115 ATATGATGTCATCAGACAGAGGATCGAGGAGATGCGTCTACCAATAGAGCCATATGAGTG 1174 |||||||||||||| | ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct 1617 ATATGATGTCATCAAAAAGAGGATTGAGGAGATGGGTCTTCCAATAGAGCCATATGAGTG 1676 Query 1175 GTACCTAGACTTGCGCCGATATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGA 1234 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 GTACCTAGACTTGCGCCGTTATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGA 1736 Query 1235 ACGTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCG 1294 ||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||| Sbjct 1737 ACGTATGATTCTCTTCGCTACTGGACTTGATAACATCAGAGACGTTATTCCTTTCCCTCG 1796 Query 1295 CTATCCTGGAAAAGCTGATCTCTGATTTCCTCCTCTCTAGACAATT 1340 ||||||||||||||||||||| ||||| |||| ||| || || ||| Sbjct 1797 CTATCCTGGAAAAGCTGATCTTTGATT-CCTCTTCTTTACACCATT 1841 Score = 562 bits (304), Expect = 3e-159 Identities = 434/496 (88%), Gaps = 12/496 (2%) Strand=Plus/Plus Query 30 GAGCTTAACGTTGAG-AGTGTGATTGATGTGGGAACTGTTGATCCGACTAAGTATCCGCT 88 ||||||||||||| | || ||||||||||| ||||| || ||| || |||||||||| || Sbjct 475 GAGCTTAACGTTGTGAAG-GTGATTGATGTTGGAACGGTGGATGCGTCTAAGTATCCACT 533 Query 89 TCCTAAGACTAAGTTGACTCCTGAG-TTTCTCAGAGATTTGCTTCATCTTCGTTCCAGGA 147 |||||||||||||||||||| |||| || | |||||| |||||||||||||||| || | Sbjct 534 TCCTAAGACTAAGTTGACTCTTGAGACTT-TGAGAGATGTGCTTCATCTTCGTTCTAGAA 592 Query 148 CTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCCACAGtt 207 |||||| ||||||||| || |||||||| |||||||| |||||||||||||| ||||||| Sbjct 593 CTAACTCGATCTCAGCTGTTGCAAGAATTCGTAATGCTCTTGCTTTTGCGACTCACAGTT 652 Query 208 tttttCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTGATTGTG 267 | |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 653 TCTTTCAAGAGCATAGTTTCCTTTACATTCACACTCCTATCATCACGACAAGTGATTGTG 712 Query 268 AAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGGTTG-AG 326 |||| ||||||||||||||||||| |||||| ||||||||| ||||||||||| ||| || Sbjct 713 AAGGTGCTGGTGAAATGTTCCAAGCAACAACTTTGATCAATTACACTGAGAGG-TTGGAG 771 Query 327 CAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGACTTATT 386 ||||||||||||||||||||||| || |||||||||||||||||||| | ||| || ||| Sbjct 772 CAGGATCTCATTGATAACCCTCCGCCTACTGAGGCTGATGTTGAAGCTGCGAGGCTCATT 831 Query 387 GTCAAGGAGAGAGGTGAAGCTGT-GTCGCG-A-CTGAAAGCTGCCAAGGCAAGCAAGGAA 443 |||| ||||||||| || ||| || ||| | |||||||||||||| |||||||||||| Sbjct 832 GTCATTGAGAGAGGT-AA--TGTTGTAGCGGAACTGAAAGCTGCCAAAGCAAGCAAGGAA 888 Query 444 GAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTTGAA 503 | |||||||||| | |||||| |||||| |||||||||| | ||| |||||| |||| Sbjct 889 GCGATCACTGCTGCTGTTGCTGAACTTAAAATAGCAAAGGAGACTTTTGCTCATATTGAT 948 Query 504 GAGAGGTCAAGGCTTA 519 |||||||| ||||||| Sbjct 949 GAGAGGTCGAGGCTTA 964 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65963516130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5