BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926483
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biot... 1240 0.0
AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II a... 1027 0.0
> AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr1:26762339-26764623
FORWARD LENGTH=1945
Length=1945
Score = 1240 bits (671), Expect = 0.0
Identities = 768/814 (94%), Gaps = 9/814 (1%)
Strand=Plus/Plus
Query 521 CTTTCTTGAC-GGTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 579
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CTTTCTTGACAGTTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 976
Query 580 TGTATACATTTGG-CCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGCATTTAGCT 638
||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 977 TGTATACATTTGGTCCC-ACTTTTCGGGCAGAGAACTCTCACACTTCAAGGCATTTAGCT 1035
Query 639 GAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGACATGAACTGT 698
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1036 GAGTTCTGGATGGTTGAGCCTGAAATTGCTTTTGCAGATATACATGACGACATGAACTGT 1095
Query 699 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCCGATGACATG 758
||||||||||||||||||||||||||||| |||||||| | || ||| ||||||||||
Sbjct 1096 GCAGAGGCGTATGTGAAATACATGTGCAAATGGTTGATGGATAAATGTGGCGATGACATG 1155
Query 759 GATTTTATGGATAAGAATGTTGATGGGGGATGCACGAAAAGGCTAAAAATGGTTGCCGAA 818
|| ||||||||||||| || || | ||||||||| ||||||||||| ||||||||| ||
Sbjct 1156 GAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTAAACATGGTTGCC-AA 1214
Query 819 A-CCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAG-GTACTTGAGAAAGCTGTAG 876
| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1215 AGCCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAGCG-ACTTGAGAAAGCTGTAG 1273
Query 877 CTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGGCCTCAGAGC 936
|| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 1274 CTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTTGGCCTCAGAGC 1333
Query 937 ATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTTATAACTACC 996
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1334 ATGAAAGATACTTGACAGAGGTTGAGTTTGATCAAAAGCCAATAATTGTGTATAACTACC 1393
Query 997 CGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCA 1056
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 CGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCA 1453
Query 1057 TGGATGTCCTCGTTCCAAAGGTGGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGAT 1116
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1454 TGGATGTCCTTGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGAT 1513
Query 1117 ATGATGTCATCAGACAGAGGATCGAGGAGATGCGTCTACCAATAGAGCCATATGAGTGGT 1176
||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1514 ATGATGTTATCAAACAGAGGATCGAGGAGATGGGTCTACCAATGGAGCCATATGAGTGGT 1573
Query 1177 ACCTAGACTTGCGCCGATATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGAAC 1236
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1574 ACCTAGACTTGCGTCGTTATGGAACAGTGAAGCATTGTGGATTTGGACTTGGCTTCGAAC 1633
Query 1237 GTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCT 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 GTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCT 1693
Query 1297 ATCCTGGAAAAGCTGATCTCTGATTTCCTCCTCT 1330
||||||||||||||||||||||||| |||| |||
Sbjct 1694 ATCCTGGAAAAGCTGATCTCTGATT-CCTC-TCT 1725
Score = 743 bits (402), Expect = 0.0
Identities = 468/500 (94%), Gaps = 4/500 (1%)
Strand=Plus/Plus
Query 23 GAGTATCGAGCTTAACGTTGAGA-GTGTGATTGATGTGGGAACTGTTGATCCGACTAAGT 81
|||||| ||||||| |||||||| | ||||||| |||||||||||||||||||||| ||
Sbjct 357 GAGTATTGAGCTTAGCGTTGAGACG-GTGATTGCGGTGGGAACTGTTGATCCGACTACGT 415
Query 82 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGTTTCTCAGAGATTTGCTTCATCTTCGTT 141
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 416 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGTTTCTCAGAGATGTGCTTCATCTTCGTT 475
Query 142 CCAGGACTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCC 201
| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 476 CTAGGACTAACTTGATCTCAGCAGTTGCAAGAATCCGTAACGCGCTTGCTTTTGCGACGC 535
Query 202 ACAGtttttttCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTG 261
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATAGTTTTTTTCAAGAACATAGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTG 595
Query 262 ATTGTGAAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGG 321
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 ATTGTGAAGGTGCTGGTGAAATGTTCCAAGTGACAACCTTGATCAATCACACTGAGAGGG 655
Query 322 TTGAGCAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGAC 381
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |
Sbjct 656 TTGAGCAGGATCTCATTGATAACCCTCCACCAACTGAGGCTGACGTTGAAGCGGCCAGGC 715
Query 382 TTATTGTCAAGGAGAGAGGTGAAGCTGT-GTCGCGACTGAAAGCTGCCAAGGCAAGCAAG 440
|||||||||||||||||||||||||||| | ||| ||| |||| ||||||||| ||||||
Sbjct 716 TTATTGTCAAGGAGAGAGGTGAAGCTGTTG-CGCAACTTAAAGTTGCCAAGGCGAGCAAG 774
Query 441 GAAGAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTT 500
||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||
Sbjct 775 GAAGAGATCACTGCTTCCGTTGCTCAACTAAGTGTAGCAAAGGCGAGTTTAGCTCATGTT 834
Query 501 GAAGAGAGGTCAAGGCTTAA 520
|||||||||| |||||||||
Sbjct 835 GAAGAGAGGTTAAGGCTTAA 854
> AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II
aminoacyl-tRNA and biotin synthetases superfamily protein |
chr5:22936543-22939036 FORWARD LENGTH=2016
Length=2016
Score = 1027 bits (556), Expect = 0.0
Identities = 739/826 (89%), Gaps = 18/826 (2%)
Strand=Plus/Plus
Query 521 CTTTCTTGAC-GGTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 579
|||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 1028 CTTTCTTGACAGTTTCCGGTCAATTACAAGTGGAGACCTATGCTTGTGCTCTTAGCAATG 1087
Query 580 TGTATACATTTGGCCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGCAT-TTAGCT 638
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1088 TGTATACATTTGGCCCGACTTTCCGGGCAGAGAACTCTCACACTTCAAGGCATCTT-GCT 1146
Query 639 GAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGACATGAACTGT 698
||||||||||||||||||||||| || |||||||||||| || | |||||||||||||||
Sbjct 1147 GAATTCTGGATGGTTGAGCCTGAGATTGCTTTTGCAGATCTAGAGGACGACATGAACTGT 1206
Query 699 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCCGATGACATG 758
|||||||||||||||||||||||||||||||||||| | |||| |||| || |||||||
Sbjct 1207 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGCTTGAGAAATGTTACGCTGACATG 1266
Query 759 GATTTTATGGATAAGAATGTT-GA-TGGGGGATGCA-CGAAAAGGCTAAAAATGGTTGCC 815
|| |||||| ||||||| || || | ||||||| | | ||||||||| ||||||||
Sbjct 1267 GAACTTATGGCTAAGAAT-TTCGACT-CAGGATGCATTG-ACAGGCTAAAATTGGTTGCC 1323
Query 816 GAAACCT-CGTTTAAGCGTGTAACATACACTGAAGCAATAGAGGTACTTGAGAAAGCTGT 874
| || ||||| |||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1324 TCTA-CTCCGTTTGGGCGTATAACATACACTAAAGCAATAGAGCTACTTGAGGAAGCTGT 1382
Query 875 AGCTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGGCCTCAGA 934
||| ||||||| | | ||||||||||| |||||| || ||| ||||| ||||| ||
Sbjct 1383 GGCTAAAGGAAA-G--GAATTTGATAACAATGTGGAGTGGGGAATCGACTTAGCCTCGGA 1439
Query 935 GCATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTTATAACTA 994
||||||||||||||||||||||||| || | |||||||||| | ||||| ||||||||
Sbjct 1440 GCATGAAAGATACTTGACAGAGGTTCTGT-T--TCAAAAGCCACTTATTGTCTATAACTA 1496
Query 995 CCCGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGC 1054
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGC 1556
Query 1055 CATGGATGTCCTCGTTCCAAAGGTGGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACG 1114
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1557 CATGGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACG 1616
Query 1115 ATATGATGTCATCAGACAGAGGATCGAGGAGATGCGTCTACCAATAGAGCCATATGAGTG 1174
|||||||||||||| | ||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 1617 ATATGATGTCATCAAAAAGAGGATTGAGGAGATGGGTCTTCCAATAGAGCCATATGAGTG 1676
Query 1175 GTACCTAGACTTGCGCCGATATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGA 1234
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GTACCTAGACTTGCGCCGTTATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGA 1736
Query 1235 ACGTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCG 1294
||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 1737 ACGTATGATTCTCTTCGCTACTGGACTTGATAACATCAGAGACGTTATTCCTTTCCCTCG 1796
Query 1295 CTATCCTGGAAAAGCTGATCTCTGATTTCCTCCTCTCTAGACAATT 1340
||||||||||||||||||||| ||||| |||| ||| || || |||
Sbjct 1797 CTATCCTGGAAAAGCTGATCTTTGATT-CCTCTTCTTTACACCATT 1841
Score = 562 bits (304), Expect = 3e-159
Identities = 434/496 (88%), Gaps = 12/496 (2%)
Strand=Plus/Plus
Query 30 GAGCTTAACGTTGAG-AGTGTGATTGATGTGGGAACTGTTGATCCGACTAAGTATCCGCT 88
||||||||||||| | || ||||||||||| ||||| || ||| || |||||||||| ||
Sbjct 475 GAGCTTAACGTTGTGAAG-GTGATTGATGTTGGAACGGTGGATGCGTCTAAGTATCCACT 533
Query 89 TCCTAAGACTAAGTTGACTCCTGAG-TTTCTCAGAGATTTGCTTCATCTTCGTTCCAGGA 147
|||||||||||||||||||| |||| || | |||||| |||||||||||||||| || |
Sbjct 534 TCCTAAGACTAAGTTGACTCTTGAGACTT-TGAGAGATGTGCTTCATCTTCGTTCTAGAA 592
Query 148 CTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCCACAGtt 207
|||||| ||||||||| || |||||||| |||||||| |||||||||||||| |||||||
Sbjct 593 CTAACTCGATCTCAGCTGTTGCAAGAATTCGTAATGCTCTTGCTTTTGCGACTCACAGTT 652
Query 208 tttttCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTGATTGTG 267
| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 653 TCTTTCAAGAGCATAGTTTCCTTTACATTCACACTCCTATCATCACGACAAGTGATTGTG 712
Query 268 AAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGGTTG-AG 326
|||| ||||||||||||||||||| |||||| ||||||||| ||||||||||| ||| ||
Sbjct 713 AAGGTGCTGGTGAAATGTTCCAAGCAACAACTTTGATCAATTACACTGAGAGG-TTGGAG 771
Query 327 CAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGACTTATT 386
||||||||||||||||||||||| || |||||||||||||||||||| | ||| || |||
Sbjct 772 CAGGATCTCATTGATAACCCTCCGCCTACTGAGGCTGATGTTGAAGCTGCGAGGCTCATT 831
Query 387 GTCAAGGAGAGAGGTGAAGCTGT-GTCGCG-A-CTGAAAGCTGCCAAGGCAAGCAAGGAA 443
|||| ||||||||| || ||| || ||| | |||||||||||||| ||||||||||||
Sbjct 832 GTCATTGAGAGAGGT-AA--TGTTGTAGCGGAACTGAAAGCTGCCAAAGCAAGCAAGGAA 888
Query 444 GAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTTGAA 503
| |||||||||| | |||||| |||||| |||||||||| | ||| |||||| ||||
Sbjct 889 GCGATCACTGCTGCTGTTGCTGAACTTAAAATAGCAAAGGAGACTTTTGCTCATATTGAT 948
Query 504 GAGAGGTCAAGGCTTA 519
|||||||| |||||||
Sbjct 949 GAGAGGTCGAGGCTTA 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5