BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926492

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71320.1 | Symbols:  | F-box family protein | chr1:26882485-...   409    2e-113


> AT1G71320.1 | Symbols:  | F-box family protein | chr1:26882485-26883818 
FORWARD LENGTH=1179
Length=1179

 Score =  409 bits (221),  Expect = 2e-113
 Identities = 282/311 (91%), Gaps = 5/311 (2%)
 Strand=Plus/Plus

Query  21   ATGGAGGATGACAAACATAATAATCCTAAGACAATGA-TTATATCAGAGGATATGGTTGA  79
            |||||| |||| |||||||||||||| |||||||| | ||||| |||| ||||| | |||
Sbjct  1    ATGGAGAATGATAAACATAATAATCCCAAGACAAT-ATTTATACCAGATGATATAGCTGA  59

Query  80   AGAGATCTTTCAACATCTTCCAATAAAATCACTGGCTAGATTCAAAGTCTTGTCaaaaaa  139
            || ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  60   AGGGATCTTTCACCATCTTCCAATAAAATCACTGGCTAGATTCAAAGTCTTATCAAAAAA  119

Query  140  aTGGAGATCGACGATTGAATCAACCTACTTTTCCCACAAACGACTCGTTCGTACAGGATT  199
            ||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||| ||
Sbjct  120  ATGGACATCGATGATCGAATCAACCTACTTTTCCCACAAACGACTCATTCGTACAGGCTT  179

Query  200  ACCAACCCCTAATATGAAATTTCTTTATGTTAGTCGACACTTTTCAGCAAATTTTGTTGA  259
            ||||||||||||||||||||||||| || |||||| ||||||| |||| |||||||||||
Sbjct  180  ACCAACCCCTAATATGAAATTTCTTCATATTAGTCAACACTTTACAGCGAATTTTGTTGA  239

Query  260  AGAAGATTCAAACTCAACAACTTTGCTTTTGGAGACTTTTTCTAGAGATGATCACGACAA  319
            |||| |||||||||||| |||||| |||||||||||||||||||||||||||||  | ||
Sbjct  240  AGAATATTCAAACTCAATAACTTTTCTTTTGGAGACTTTTTCTAGAGATGATCA--A-AA  296

Query  320  CAACGGAAAAA  330
            |||| ||||||
Sbjct  297  CAACAGAAAAA  307


 Score =  215 bits (116),  Expect = 4e-55
 Identities = 178/207 (86%), Gaps = 8/207 (4%)
 Strand=Plus/Plus

Query  376  TCGACAAATCTCAAAACGAAACTATTCAAGTATTGGGGTCTTGTGATGGATTGGTCTTGA  435
            ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  311  TCGACGAATCTCAAAATAAAACTATTCAAGTATTGGGGTCTTGTGATGGATTGGTCTTGC  370

Query  436  TTCGGATCTACGACGATTTTAGGTACATTTACTTGATCAATCCGACGACTGGAA-AACAC  494
            |||||||| | |||||||| |||| |||||||||||||||||||||||||  || |||||
Sbjct  371  TTCGGATCCATGACGATTTCAGGTCCATTTACTTGATCAATCCGACGACTA-AAGAACAC  429

Query  495  ATGACACTTTATCCCAAATTTACGCAATGGCCATTAACTTTTAGATTCGAATTTACC---  551
            |||| ||||| |||| |||||| |||||||||||| ||| |||| ||  | || |||   
Sbjct  430  ATGAAACTTTCTCCCGAATTTATGCAATGGCCATTTACTCTTAG-TT--ACTTAACCCCC  486

Query  552  GCAATGGTCGATAGACCATAGAGACAA  578
            ||||||| | ||| ||||| |||||||
Sbjct  487  GCAATGGCCAATAAACCATGGAGACAA  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5