BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926494

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71320.1 | Symbols:  | F-box family protein | chr1:26882485-...   414    2e-115


> AT1G71320.1 | Symbols:  | F-box family protein | chr1:26882485-26883818 
FORWARD LENGTH=1179
Length=1179

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 272/295 (92%), Gaps = 4/295 (1%)
 Strand=Plus/Plus

Query  16    TAGAAATGTGGAATCTGAATGACCGTTTGTGCGTATCGGATGTGCTA-AAATGTTCAAAT  74
             |||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||
Sbjct  887   TAGAAATGTGGAATCTGAATGAACGTTTGTGCCTATCGGATGTGCTAGAAA-GTTCAAAT  945

Query  75    TTGGTTGTTTGGAGTTTACAACAAGAATATCCTACCGTGAAATGGGAGAAAATATATTCT  134
             ||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||||
Sbjct  946   TTGGTCGTTTGGAGTTTACACCAAGAATATCCTACCGAAAAATGGGAGAAAATATATTCT  1005

Query  135   GTTAATATTGGA-TTTATAAGTACCAACCAGTTACATGAAAAGTTTTGGATGTTTGGTCT  193
              |||| ||| ||  ||||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct  1006  ATTAAGATT-GACGTTATAAGAACCAACCAATTACATGAAAAGTTTTGGATGCTTGGTCT  1064

Query  194   AGCGGCAGCCTATTTTTCAAGTATTAGAAATCATCGAGATCAAGTTTCtttttttAGACA  253
             |||||| ||||||||||||| ||| ||||||| || ||||||||||||||||||||||||
Sbjct  1065  AGCGGCTGCCTATTTTTCAAATATCAGAAATCGTCAAGATCAAGTTTCTTTTTTTAGACA  1124

Query  254   AAGAACGGTTTCGTATTCGCCAACAATGATTTCTCCTTCAAATTTGATGCTTTGA  308
             ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1125  AAGAACGATTTCGTATTTGCCAACAATGATTTCTCCTTCAAATTTGATGCTTTGA  1179



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5