BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926497
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71350.1 | Symbols: | eukaryotic translation initiation fac... 2699 0.0
> AT1G71350.1 | Symbols: | eukaryotic translation initiation factor
SUI1 family protein | chr1:26888408-26891231 REVERSE LENGTH=1933
Length=1933
Score = 2699 bits (1461), Expect = 0.0
Identities = 1732/1859 (93%), Gaps = 33/1859 (2%)
Strand=Plus/Plus
Query 2 GAC-ACTACAGGCGAACAGAATGTTCAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 60
||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 3 GACGACTACAAGCGAACATAATGTTTAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 62
Query 61 TCTCCGGCGCTGACCGGAAAAAACTCCGCCGCACCGTCCGAAATAGGCTTCCCCTTCTAA 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 63 TCTCCGGCGCTGACCGGAAAAAACTCCGTCGCACCGTCCGAAATAGGCTTCCCCTTCTTA 122
Query 121 CCGATGAACTCCTCGACGCAATCCTTCCTCCCAAGGTCGAGATAACTCTTTCCAAGTTTC 180
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 123 CCGATGAACTCCTCGACGCAATTCTTCCTCCCAAGGTCGAGATTACACTTTCCAAGTTTC 182
Query 181 AGAATCGAGTTCTTGTCTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 240
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGAATCGAGTTATTGTTTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 242
Query 241 GAAGAGGGACTGAGATATTCCCCACAGTTTTTGCTCTCTGGGAGGCTCCTGAAATGTTAC 300
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 243 GAAGAGGAACTGAGATTTTCCCCACAGTTTTTGCTCTGTGGGAGGCTCCTGAAATGTTAC 302
Query 301 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGGTATGTTTTAGGCGGTGCAGATTTGA 360
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 303 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGTTATATTATAGGCGGTGCAGATTTGA 362
Query 361 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTTTCCTTCTTTCTCTGCTGGAGAAATAT 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 363 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTATCCTTCTTTCTCTGCTGGAGAAATAT 422
Query 421 GGGCTGTCAAAGTTCCTGGAAATCTGGCACCTATTGCGGTTGGGTGTACTACAATGAGTA 480
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 423 GGGCTGTCAAAGTTCCTGGAAATCTAGCACCTATTGCGGTTGGGTGTACCACAATGAGTA 482
Query 481 GTGAAGAAGCCCTTAAAGCAGGTTTGCGTGGGAAGGCTTTACGGATAACTCATTATTACC 540
|||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 483 GTGAAGAAGCTCGTAAAGCAGGTTTACGTGGGAAGGCTTTAAGGATAACTCATTATTACC 542
Query 541 GTGACTTCCTTTGGGAATCAGCTGAGGGGCACTACGTTCCAAATGCTGGTTTTATGGAGA 600
|||||||||| |||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 543 GTGACTTCCTATGGGAATCAGCTGAGGGGCATTATGTTCCAAATGCGGGGTTTATGGAGG 602
Query 601 ATGTTGTCATGGAGGACCCATCGTACCTTGCTTCTGGTTCAGTTGAAGAAATCTCAGACT 660
|||| ||||||||||||||||||||||||||| ||||||||| |||||| || | |||
Sbjct 603 ATGTGGTCATGGAGGACCCATCGTACCTTGCTCCTGGTTCAGGTGAAGATATTTTAGA-- 660
Query 661 CTTCAGCTGGTCCTCAGACAAGCA-CAGAAAT--TGAAGATGAATCTGGTGATGTGAATA 717
|| || | || | |||||| | ||||| ||||||||||||| | || | | |
Sbjct 661 ---CA-CT--T-CT--G-CAAGCACCGGAAATGAAGAAGATGAATCTGCT-CTG-G-A-A 706
Query 718 ATATTGGGCCTTCAACCTCTGTTACGGATGCTAAGAATGATACTGAAGAACATGTGGTTG 777
| | | ||||||| || | | ||||||||||||||||| |||||| |||||| ||||
Sbjct 707 ACA----G-CTTCAACATCGGCTGCGGATGCTAAGAATGATGCTGAAGTACATGTCGTTG 761
Query 778 GGAGCATGAATGAGCTGA-ACTTAGCAGATGACGTTTCTGCTAATGAAGCAAATACCGAC 836
|||||||||||||||| | |||| | |||||| || | ||||| |||| | |||||||||
Sbjct 762 GGAGCATGAATGAGCT-ATACTTGGTAGATGATGTATGTGCTACTGAAACTAATACCGAC 820
Query 837 AAGCAGAATATTCTGTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGCCTTTTGCAA 896
||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 821 AAGCAGATTACTCTCTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGTCTTTTGCAA 880
Query 897 GCATTGCATACAACACTAAAGGA-AAAGGACCTTCCCATCCCAGGAAGTACTCTGTGGGC 955
||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||
Sbjct 881 GCATTGCATACAACACTAAAGGAGAAA-GACCTTCCCATCCCAGGAAGCACTCTATGGGC 939
Query 956 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 999
Query 1016 TAAAAAGCTGTCAAAGTGGCTGCAATCTAAAGCCTCTACTGGAATGATATCTGTTAAAGA 1075
||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 1000 TAAAAAGTTGTCAAAGTGGCTGCAATCTAAAGCGTCTGGTGGAATGATATCTGTTAAGGA 1059
Query 1076 AGACAAGCATAAGAAGGAGATTGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1135
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AGACAAGCATAAGAAGGAGATAGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1119
Query 1136 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCTGAGTCTCCTGGAGAGCGCTCCAC 1195
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1120 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCCGAGTCTCCTGGAGAGCGCTCCAC 1179
Query 1196 AGG-GCAAGCTCAGTCAGAGAAAATGCTTGAAATCATAGAGGTCTATAAACCAAGCATAC 1254
|| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 1180 -GGCGCAAGCTCAGTCAGAGAAAGGGCTTGAAATTATAGAGGTCTATAAATCAAGCATAC 1238
Query 1255 ACAACAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1314
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 ACAATAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1298
Query 1315 AAGCCACTGATGTTGTGTTCAGATACATCGAGAAGGAAAATCTGGTAAAGCCAGCAAACA 1374
|||||||||| |||||||||| |||||| |||||||||||||| ||||||||| ||||||
Sbjct 1299 AAGCCACTGACGTTGTGTTCAAATACATTGAGAAGGAAAATCTAGTAAAGCCAACAAACA 1358
Query 1375 AGTCAATGGTGGTGTTGGATCCGATATTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1434
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1359 AATCAATGGTGGTGTTGGATCCGATACTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1418
Query 1435 AGGGATCGGCATATCCGTCAGAGATTCACAAAAAGGATGTTGGATCGACGTTTGTAGGGA 1494
||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 1419 AGGGATCGGCATATCCGTCAGAGATCCACAAAAAGGATGTTGGGTCGACATTTGTAGGTA 1478
Query 1495 GGATGCAGCCTAATCACGTAGTCATGAGAGGCGGTGGTGAACCCGTGGTTCGTAAAGGAG 1554
| |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1479 GAATGCAGCCTAATCACGTAGTGATGAGAGGAGGCGGTGAACCCGTGGTTCGTAAAGGAG 1538
Query 1555 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACAAAGG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1539 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACCAAGG 1598
Query 1615 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1658
Query 1675 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1718
Query 1735 TTCAAGGAGGTGTGATTGATAATCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1794
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1719 TTCAAGGAGGTGTGATTGATAACCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1778
Query 1795 AGAGATACATTGAAGTTCTTGATAAGACTAGGAAA-TGATTTGttttttctttttCATT 1852
|||||||||| |||||||||||||||||||| ||| ||| | ||||||||| |||||||
Sbjct 1779 AGAGATACATCGAAGTTCTTGATAAGACTAG-AAAGTGAATGGTTTTTTCTATTTCATT 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91666195170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5