BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926503
Length=2275
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71420.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3214 0.0
> AT1G71420.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26917822-26920099 REVERSE LENGTH=2278
Length=2278
Score = 3214 bits (1740), Expect = 0.0
Identities = 2091/2263 (92%), Gaps = 13/2263 (1%)
Strand=Plus/Plus
Query 1 GTAATGAA-TTCGAAGCGTCGATGATTACAAGTTTATCACATATCTCGTTTGGGACATTG 59
|||||||| |||| |||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 21 GTAATGAATTTCG-AGCGTCGATGATTACAAGCTTATCTCAAATCTCTTTTGGGACATTG 79
Query 60 AGGCGCTTTTGCTCTTCTGCTTTACCTTCTGCACTGAAACACGAACTTGTTGAAGGATTG 119
||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 80 AGGCGCTTTGGCTCTTCTGTTTTACCTTCTGCACTGAAACGCGAATTTGTTGAAGGATTG 139
Query 120 CGTACGTTAGTAAGGTCTGGTGATCTCCGTCGAGCTCTTTCCTTGTTCTATTGTGCGCCT 179
|||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||
Sbjct 140 CGTACGTTAGTAAGGTCTGGTGATATCCGTCGAGCTGTTTCCTTATTCTATTCTGCGCCG 199
Query 180 GTCGAGCTTCAGTCTCAGCACGCTTACGCGGCTCTGTTCCAAGCATGTGCAGATCAACGC 239
||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct 200 GTCGAGCTTCAGTCTCAACAGGCTTACGCAGCTCTGTTCCAAGCATGTGCAGAGCAACGC 259
Query 240 AATCTCCGCGATGGAATCAACTTGCACCGCCACATGTTCTCACATCCCTATTGTTATTCA 299
||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 260 AATCTCCTCGATGGAATCAACTTGCACCACCACATGCTCTCACATCCCTATTGTTATTCA 319
Query 300 CAGAACGTTATACTTGCTAATTACCTCATTACTATGTATGCGAAATGCGGGAATATCTTA 359
|||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||
Sbjct 320 CAGAACGTTATACTTGCTAATTTCCTCATTAATATGTATGCCAAATGTGGGAATATCTTA 379
Query 360 TACGCACGTCAGGTGTTTGATACAATGCCTGAGAGGAATGTAGTTTCGTGGACTGCACTG 419
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 380 TACGCACGACAGGTGTTTGATACAATGCCTGAGAGGAATGTTGTTTCATGGACTGCATTG 439
Query 420 ATCACAGGCTATGCGCAGGCAGGGAATGAGCAAGATGGATTCTGTCTTTTCTCTTCTATG 479
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 440 ATCACAGGCTATGTACAGGCTGGGAATGAGCAAGAGGGATTCTGTCTTTTCTCGTCTATG 499
Query 480 TTAGCCCATTGCTGCCCTAACGAGTTTGCGTTATCAAGCGTATTGACTTTGTGTCGGTAT 539
||| ||||||| | ||||||||||||| || | |||||||| || |||| ||||| |||
Sbjct 500 TTATCCCATTGTTTCCCTAACGAGTTTACGCTGTCAAGCGTGTTAACTTCATGTCGATAT 559
Query 540 GAGCCTGGAAAGCAGGTACATGGACTTGCTTTGAAACTTGGTTTATATTGTTCGATTTAT 599
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 560 GAGCCTGGAAAGCAGGTACATGGACTTGCTCTGAAACTTGGTTTACATTGTTCGATCTAT 619
Query 600 GTGGCGAATGCACTTATCTCTATGTACGGTAGGTGTCATGATGGTACCGCCGCCTATGAA 659
|||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 620 GTGGCGAATGCAGTTATCTCTATGTACGGTAGGTGTCATGATGGTGCCGCAGCATATGAA 679
Query 660 GCTTGGACTGTATTTGAGGCCATGGAGTTTAAGAATCTGGTTACTTGGAACTCAATGATT 719
||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 680 GCTTGGACTGTGTTTGAAGCCATAAAGTTTAAGAATTTGGTTACTTGGAACTCAATGATT 739
Query 720 GCAGCTTTTCAGTGTTGCAATCTTGGGAAACAGGCCATTGGCGTTTTTATGCGGATGCAT 779
|| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 740 GCTGCTTTTCAGTGCTGCAATCTTGGGAAAAAGGCCATTGGCGTTTTTATGCGGATGCAT 799
Query 780 AGTGATGGAGTCGGATTTGATCGCGCCACGGTT-CTTAATATATGTACTACCTTGTACAA 838
||||||||||| ||||||||||| ||||| ||| |||||||||||| || ||||||||||
Sbjct 800 AGTGATGGAGTGGGATTTGATCGTGCCAC-GTTGCTTAATATATGTTCTTCCTTGTACAA 858
Query 839 AAGCTCTGACTTGGATCCTGATCAGGTTTCCAAGTGTTGTCTTCAGCTGCATTCTCTGAC 898
|||||||||||| | |||| || ||||||| |||||||||||||| ||||||||||||||
Sbjct 859 AAGCTCTGACTTAGTTCCTAATGAGGTTTCAAAGTGTTGTCTTCAACTGCATTCTCTGAC 918
Query 899 TGTAAAATCCGGGTTGGTAACTCAGACTGAAGTGGCTACTGCATTGGTTAAAGTTTATTC 958
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 919 TGTAAAATCCGGGTTGGTGACTCAGACTGAAGTGGCTACTGCATTGATTAAAGTTTATTC 978
Query 959 AGAAATTTTAGGAGAATTTACTGACTGCTACAAGCTTTTTATAGACATGAGTCACTGCAG 1018
|||||| |||| ||| | |||||||||||||||||||||||| || ||||||||||||||
Sbjct 979 AGAAATGTTAGAAGACTATACTGACTGCTACAAGCTTTTTATGGAAATGAGTCACTGCAG 1038
Query 1019 GGACATTGTTGCTTGGACGGGGATTATAACAGCGTTTGCAGTGTATGATCCAGAGAGGGC 1078
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1039 GGACATTGTTGCTTGGAATGGGATTATAACAGCGTTTGCAGTGTATGATCCGGAGAGAGC 1098
Query 1079 TATTCTTCTATTTGGTCAGTTACGTCACGAGAAGCTAAGCCCTGACTGGTATACTTTCTC 1138
||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1099 TATTCATCTCTTTGGTCAGTTACGTCAGGAGAAGCTAAGCCCTGACTGGTATACTTTCTC 1158
Query 1139 AAGTGTACTAAAAGCTTGTGCAGGACTTGTCACTGCTCGCCATGCTTTGTCTATACACGC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AAGTGTACTAAAAGCTTGTGCAGGACTTGTCACTGCTCGCCATGCTTTGTCTATACACGC 1218
Query 1199 TCAAGTGATCAAGGGTGGTTTTGCGACTGACACAGTGGTGAACAACTCGTTAATCCATGC 1258
|||||||||||||||||||||| | ||||||| ||| |||||||||| |||||||||||
Sbjct 1219 TCAAGTGATCAAGGGTGGTTTTTTGGCTGACACGGTGCTGAACAACTCATTAATCCATGC 1278
Query 1259 GTATGCCAAGTGTGGCTCTCTTGACTTGTGTAAGCGTGTATTTGACGATATGGATTCGCG 1318
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1279 GTATGCCAAGTGTGGCTCTCTTGACTTGTGTATGCGTGTATTTGACGATATGGATTCGCG 1338
Query 1319 GGATGTGGTGTCGTGGAACTCAATGCTCAAGGCTTACTCATTGCATGGCCAAGTAGACTC 1378
|||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1339 GGATGTTGTTTCCTGGAACTCAATGCTCAAGGCTTACTCATTACATGGCCAAGTAGACTC 1398
Query 1379 AATTCTACCAGTCTTTCAGAAAATGGACATTAAGCCTGATTCAGCGACTTTCATAGCTCT 1438
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 1399 AATTCTACCAGTCTTTCAGAAAATGGACATCAACCCCGATTCAGCGACTTTCATAGCCCT 1458
Query 1439 TCTCTCGGCTTGCAGCCACGCTGGAAGAGTAGAAGAAGGATTGAGAATATTCAGATCCAT 1498
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1459 TCTCTCGGCTTGCAGCCACGCAGGACGAGTAGAAGAAGGATTGAGAATATTCAGATCCAT 1518
Query 1499 GTTTGAGAAACCTGAAACTCTTCCTCAGCTAAATCACTACGCTTGTGTGATCGATATGCT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 GTTTGAGAAACCTGAAACTCTTCCTCAGCTAAATCACTACGCTTGTGTGATCGATATGCT 1578
Query 1559 AGGCAGAGCTGAGCGTTTTGCTGAGGCGGAAGAGGTTATCAAGCAGATGCCAATGGAGCC 1618
| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1579 AAGCCGAGCTGAGCGTTTTGCTGAGGCAGAAGAGGTTATCAAGCAGATGCCAATGGACCC 1638
Query 1619 AGATGCTGTAGTTTGGAGTGCATTACTGGGATCATGCAGGAAA-CATGGTAACACTCAGT 1677
||||||||||||||||| ||||||| |||||||||| || ||| || |||||||| | ||
Sbjct 1639 AGATGCTGTAGTTTGGATTGCATTATTGGGATCATGTAG-AAAGCACGGTAACACCCGGT 1697
Query 1678 TGGGTAAGTTAGCGGCAGATAAACTAAAAGAGATAG---AACCCACAAACTCATTGAGTT 1734
||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||
Sbjct 1698 TGGGTAAGTTAGCGGCAGATAAACTTAAAGAGCTAGTCGAACCCACAAACTCAATGAGTT 1757
Query 1735 ACATCCAGATGTCAAACATATACAATGCCGAAAGTAGCTTTAACGAAGGCAATAAAAGCA 1794
||||||||||||||||||||||||| || ||| ||||||||||||||| |||| ||||
Sbjct 1758 ACATCCAGATGTCAAACATATACAACGCAGAAGGTAGCTTTAACGAAGCCAATCTTAGCA 1817
Query 1795 TAAAGGAGATGGAAACATGGCGAGTAAGAAAAGAACCAGGCTTGAGCTGGACAGAGATAG 1854
|||||||||||||||||||| ||||| | |||||||||| ||| ||||||||||||||||
Sbjct 1818 TAAAGGAGATGGAAACATGGAGAGTACGGAAAGAACCAGACTTAAGCTGGACAGAGATAG 1877
Query 1855 GAAACAAGGTTCACGAATTCACATCAGGAGGAAGACGCCGTCCGGACAGGGAAGCCATAT 1914
|||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||| |||
Sbjct 1878 GAAACAAGGTTCACGAATTCGCATCGGGAGGAAGACACCGTCCGGACAAGGAAGCCGTAT 1937
Query 1915 GCAGAGAATTGGAGAGACTGATTAGTCGGTTAAAGGAAATGGGTTATGTTCCAGAAATGA 1974
|||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 1938 ACAGAGAATTGAAGAGACTGATTAGTTGGTTAAAGGAGATGGGTTACGTTCCAGAAATGA 1997
Query 1975 GGTCAGCTTTACAACAAATTGAGGAGGACGAACAGAAGGAAGA-ACATCTATTGCATCAC 2033
||||||||| |||| | || || || || |||||| ||||||| | || |||| ||||||
Sbjct 1998 GGTCAGCTTCACAAGATATAGAAGACGAAGAACAGGAGGAAGATA-ATTTATTACATCAC 2056
Query 2034 AGCGAGAAACTGGCGTTAGCATTTGCGGTGATGGAGGGAAGAAAATC-AGGTGATTGTGG 2092
||||||||||| |||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 2057 AGCGAGAAACTTGCGTTAGCGTTTGCGGTTATGGAGGGAAGAAAATCGAG-TGATTGTGG 2115
Query 2093 TGTTAATTTGATACAAATAATGAAGAACATAAGGATATGTATTGATTGCCATAACTTCAT 2152
||| ||||||||||| || |||||||||| |||||| |||||||||||||||||||||||
Sbjct 2116 TGTGAATTTGATACAGATTATGAAGAACACAAGGATCTGTATTGATTGCCATAACTTCAT 2175
Query 2153 GAAGTTGGCCTCTAAGCTTTTGGGAAAAGAGATTCTTCTAAGAGACTCGAATCGGTTTCA 2212
||| || || ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2176 GAAATTAGCTTCTAAGCTTTTGGGAAAAGAGATTCTTATGAGAGACTCGAATCGGTTTCA 2235
Query 2213 CCATTTCAAAGATTCTTCTTGCTCCTGTAATGACTACTGGTAA 2255
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 CCATTTCAAAGATTCTTCTTGCTCCTGTAATGACTACTGGTAA 2278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112901025705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5