BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926504
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 785 0.0
> AT1G71430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria
- 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0;
Other Eukaryotes - 2 (source: NCBI BLink). | chr1:26920440-26921152
FORWARD LENGTH=713
Length=713
Score = 785 bits (425), Expect = 0.0
Identities = 506/543 (93%), Gaps = 13/543 (2%)
Strand=Plus/Plus
Query 1 TGATTTCACCAGAGCGAAATCATGGAAGGGAAAGAAAACTGCAAAGATCTTCTGAAATTG 60
||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 104 TGATTTCACCAAAGAAAAATCATGGAAGGGAAAGAAAACTGCAAAGATCTCCTGAAATTG 163
Query 61 GAGCTCAAGAATCCATCTTCTTCCTCTGCTATGGATTCAGCACTTTTGATGTGTACGGAG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GAGCTCAAGAATCCATCTTCTTCCTCTGCTATGGATTCAGCACTTTTGATGTGTACGGAT 223
Query 121 AAGAATAAGAAGAAGAAG-AG--GGAGGCTCCTCCTCCATCGAAGCCAACGATTGGTCCA 177
|||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 224 AAGAATAAGAAGAAGAAGAAGATGGAGGCTCCTCCTCCATCGAAGCCAACGATTGCTCCA 283
Query 178 GTTCCCAAAAGCCAACTTCTTGGTAAAGTTAAAGGCTTCGTGGGGTTTATGGCGGAAGCT 237
||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||
Sbjct 284 GTTCCTAAAAGCCAACTTCTTGGTAAACTTAAAGGCTTCTTGGGGGTTATGGCGGAGGCT 343
Query 238 AACAAAAAGTCTGAGGCAAACCCAGAAGCTTATAATATCGAAGCACTAACGGGTAACGAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AACAAAAAGTCTGAGGCAAACCCAGAAGCTTATAATATCGAAGCACTAACGGGTAACGAA 403
Query 298 TCTGAACTTATCGAGATGGACTTGATGCTCGGTGTCGCTGATCTCAACACACCTGAAGCA 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 404 TCTGAACTTATCGAGATGGACTTGATGCTCGGTGTCGCTGATCTCAACACGCCTGAAGCA 463
Query 358 GTCAGTGCGGCTGAGGCAGCTATTGCTGGCATTGGTCCAGCAGCTGTAAGTGGAGATTCG 417
|||||||||||||| || |||||||| ||||||||||| || |||| |||||||||||||
Sbjct 464 GTCAGTGCGGCTGAAGCTGCTATTGCCGGCATTGGTCCGGCCGCTGAAAGTGGAGATTCG 523
Query 418 AGCAGCGATGA-GAG--TGATAGCGACAGTGATGGAGAGGAGAATAAGAGTGAAGAAGAA 474
||||||||||| ||| ||||||||| ||||| |||||||||| |||||||| ||||
Sbjct 524 AGCAGCGATGATGAGAGTGATAGCGAAAGTGAAGGAGAGGAGAGTAAGAGTGCAGAA--- 580
Query 475 TGTAGCAGAAAACGACCCAATATCATTGAGCTCTCATaaaa-aaaaCATGT---CTCTTC 530
||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 581 TGTAGCAGAAAACGATCCAAGATCATTGAGCTCTCATAAAATAAAACATGTTGTCTCTTC 640
Query 531 TCA 533
|||
Sbjct 641 TCA 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25518946676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5