BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926519

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70160.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   446    8e-125


> AT1G70160.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G27020.1); 
Has 108 Blast hits to 108 proteins in 20 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; 
Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | 
chr1:26419949-26422529 FORWARD LENGTH=1966
Length=1966

 Score =  446 bits (241),  Expect = 8e-125
 Identities = 280/299 (94%), Gaps = 2/299 (1%)
 Strand=Plus/Plus

Query  1     AAGAAACAGCGAGGCGTGGAATGTCATTCGATGAATTACTCACCATCCCTGAACAGGATG  60
             |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  1394  AAGAAACAGCGAGGCGTGGAATGTCATTTGATGAGTTACTCACCATCCCTGAACAGGATG  1453

Query  61    AATGGGTTTATAGTGACGAG-AAATCAACAGCATGTGTTGCTTTCATCCTTGAAATGTAC  119
             | ||||||||||| |||| | ||||| ||| ||||||||||||||||||||| |||||||
Sbjct  1454  AGTGGGTTTATAGCGACG-GTAAATCGACAACATGTGTTGCTTTCATCCTTGCAATGTAC  1512

Query  120   AAAGCCGCTGGTGTATTCGGCCCTCTCGCTAATAACATTCAAGTCACTGAATTCACTATC  179
             ||||| |||||| |||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct  1513  AAAGCTGCTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTATC  1572

Query  180   CGAGATGCGTACACTCCGAAGTTATTTGAGTCTAACCAGACTCGGCTACCGAGTTGGTGC  239
             |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1573  CGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTACCGAGTTGGTGC  1632

Query  240   AACACAGAGGAAGAGAAGCTTGACTTCTGTCAGATTCTAGGTGAATACAGAATGGAGTT  298
             ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1633  AACACCGAGGAAGGGAAGCTTGACTTCTGTCAAATTCTAGGTGAATACAGAATGGAGTT  1691



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5