BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926520
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71695.1 | Symbols: | Peroxidase superfamily protein | chr1... 1738 0.0
> AT1G71695.1 | Symbols: | Peroxidase superfamily protein | chr1:26964249-26966688
FORWARD LENGTH=1318
Length=1318
Score = 1738 bits (941), Expect = 0.0
Identities = 1053/1107 (95%), Gaps = 7/1107 (1%)
Strand=Plus/Plus
Query 9 aaaaaaaac--caaaaaaTGGCAAAGGCTTATTCAACACGTGTCCTCACGTTTCTGATGT 66
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 94 AAAAAAAACAAAAAAAAATGACAAAGGCTTATTCAACACGTGTCCTCACGTTTCTGATAT 153
Query 67 TGATCTCGCTAATGGCGGTGACACTGAACCTTTTGT-CCACCGCAGAGGCAAAGAAGCGG 125
|||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||
Sbjct 154 TGATCTCGCTAATGGCGGTGACACTGAACCTTTT-TCCCACGGTAGAGGCAAAGAAGCGG 212
Query 126 AGAAGAGATGTTCCTATAGTGAAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCG 185
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 AGTAGAGATGCTCCTATAGTGAAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCG 272
Query 186 AAAGTCGAAAACATTATCAAAAAAGAGCTCAAGAAAGTCTTCAAGAGAGACATTGGTTTA 245
|||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 273 AAAGTCGAAAACATCATCAGAAAAGAGCTCAAGAAAGTCTTCAAGCGAGATATTGGTTTA 332
Query 246 GCCGCAGCCATCCTTCGTATACATTTCCATGATTGCTTCGTTCAGGGATGTGAAGCATCA 305
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GCCGCTGCCATCCTTCGTATACATTTCCATGATTGCTTCGTTCAGGGATGTGAAGCATCA 392
Query 306 GTGCTGCTAGCTGGATCAGCCAGTGGACCAGGAGAACAATCATCAATCCCGAACCTGACA 365
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 393 GTGCTGCTAGCTGGATCAGCCAGTGGACCAGGAGAACAATCATCAATCCCAAATCTGACA 452
Query 366 CTACGTCAACAAGCCTTTGTCGTCATCAATAACCTTCGTGCCCTCGTCCAAAAGAAGTGT 425
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 453 CTACGACAACAAGCCTTTGTCGTCATTAATAACCTTCGTGCCCTCGTCCAAAAGAAGTGC 512
Query 426 GGTCAAGTCGTCTCTTGCTCCGATATCCTCGCTCTCGCCGCCCGCGACTCCGTCGTCCTA 485
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 513 GGTCAAGTCGTCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA 572
Query 486 TCAGGAGGGCCAGACTATGCTGTGCCACTTGGCCGACGCGACTCTCTGGCGTTCGCGAGC 545
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 573 TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCGTTCGCGAGC 632
Query 546 CAGGAAACGACGTTAAATAACTTACCACCACCGTTCGCCAACGCGAGCCAGCTCATCGCC 605
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 633 CAGGAAACGACGTTAAATAACTTACCACCACCGTTCTTCAACGCGAGTCAGCTCATCGCC 692
Query 606 GACTTCGCCAGCAGAAACCTCAACATCACCGACTTAGTAGCACTTTCCGGTGGTCACACC 665
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GACTTCGCCAACAGAAACCTCAACATCACCGACTTAGTAGCACTTTCCGGTGGTCACACC 752
Query 666 ATCGGAATTGCGCATTGTCCATCTTTCACAGACCGGCTCTACCCGAACCAAGACCCAACC 725
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 753 ATCGGAATCGCGCATTGTCCGTCTTTCACAGACCGACTCTACCCGAACCAAGACCCAACC 812
Query 726 ATGAACCAGTTCTTCGCCAACAGCCTCAAACGCACTTGTCCCACCGCGAACTCGAGCAAC 785
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 813 ATGAACCAGTTCTTCGCCAACAGCCTCAAACGCACTTGTCCCACCGCAAACTCGAGCAAC 872
Query 786 ACGCAAGTGAATGACATAAGGAGTCCTGACGTGTTTGACAACAAGTACTATGTTGATCTC 845
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 873 ACGCAAGTGAATGACATAAGGAGTCCTGACGTGTTCGACAACAAGTACTACGTTGATCTC 932
Query 846 ATGAACCGACAAGGGCTGTTCACTTCTGACCAGGATCTGTTCGTGGACAAGAGGACACGT 905
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 933 ATGAACCGACAAGGGCTATTCACTTCTGACCAGGATCTCTTCGTGGATAAGAGGACACGT 992
Query 906 GGCATTGTGGAGAGCTTTGCGATCGACCAACAGCTGTTTTTCGATCATTTTACGGTGGCC 965
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| |||||
Sbjct 993 GGCATTGTGGAAAGCTTTGCGATCGACCAGCAGCTGTTTTTTGATTATTTTACTGTGGCG 1052
Query 966 ATGATCAAGATGGGTCAGATGAGTGTCTTGACGGGGACACAAGGAGAGATTCGTTCCAAC 1025
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1053 ATGATCAAGATGGGTCAGATGAGTGTCTTAACTGGAACACAAGGAGAGATTCGTTCCAAT 1112
Query 1026 TGTTCAGCCAGAAACACCCAAAGTTTCATGTCCGTTTTGGAAGAAGGCATAGAGGAAGCT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TGTTCAGCCAGAAACACCCAAAGTTTCATGTCCGTTTTGGAAGAAGGCATAGAGGAAGCT 1172
Query 1086 GTTGTTTCCATGATCTAAATAACCata 1112
|| | ||||||||||||||||||||
Sbjct 1173 ATT-T--CCATGATCTAAATAACCATA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5