BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926523
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71697.1 | Symbols: ATCK1, CK, CK1 | choline kinase 1 | chr1... 1700 0.0
> AT1G71697.1 | Symbols: ATCK1, CK, CK1 | choline kinase 1 | chr1:26971223-26973464
FORWARD LENGTH=1642
Length=1642
Score = 1700 bits (920), Expect = 0.0
Identities = 999/1038 (96%), Gaps = 2/1038 (0%)
Strand=Plus/Plus
Query 16 aaaaaaaTGGCGATCAAGACAAAGACTAGTCTGATTCCAAGTTGTTCATCACCGGAGGAT 75
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 309 AAAAAAATGGCGATCAAGACAAAGACTAGTCTAATTCCAAGTTGTTCATCACCTGAGGAT 368
Query 76 CTAAAACGCGTTTTGCAAACGCTAGGTTCGAGCTGGGGAGATGTAGTTGAAGATCTGGAA 135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CTAAAACGCGTTTTGCAAACGCTAGGTTCGAGCTGGGGAGATGTAGTTGAAGATCTGGAG 428
Query 136 CGTCTTGAGGTTGTTCCGTTAAAAGGAGCTATGACTAACGAGGTTTATCAGATTAATTGG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CGTCTTGAGGTTGTTCCGTTAAAAGGAGCTATGACTAACGAGGTTTATCAGATTAATTGG 488
Query 196 CCTACTTTAAACGGCGAAGATGTTCACCGGAAAGTTCTTGTTCGGATCTACGGTGACGGC 255
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 489 CCTACTTTAAACGGTGAAGATGTTCATCGGAAAGTTCTTGTTCGGATCTACGGTGACGGC 548
Query 256 GTTGACCTTTTCTTTAACAGAGATGATGAAATCAAAACCTTTGAGTGTATGTCTCATCAT 315
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 549 GTTGACCTTTTCTTTAACAGAGGTGATGAAATCAAAACGTTTGAGTGTATGTCTCATCAT 608
Query 316 GGTTATGGTCCTAAGCTTCTTGGTCGCTTCTCTGATGGTCGTCTTGAAGAATTTATCCAC 375
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 609 GGTTATGGTCCTAAGCTTCTTGGTCGTTTCTCTGATGGTCGTCTTGAAGAATTCATACAC 668
Query 376 GCAAGAACTCTTTCTGCAGATGATCTTCGTATCGTAGAAACATCTGATTTCATTGCTGCG 435
|| ||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||
Sbjct 669 GCCAGAACTCTTTCTGCAGATGATCTTCGTGTAGCAGAAACATCTGATTTCATCGCTGCG 728
Query 436 AAACTAAGAGAGTTTCATAAGCTTGATATGCCTGGTCCAAAGAACGTTCTTCTCTGGGAA 495
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AAGCTAAGAGAGTTTCATAAGCTTGATATGCCTGGTCCAAAGAACGTTCTTCTCTGGGAA 788
Query 496 AGACTCAGGACTTGGCTTAAGGAGGCTAAGAACTTGGCTTCACCAATAGAGATGGATGAG 555
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 789 AGACTTAGGACTTGGCTTAAGGAGGCTAAGAACTTGGCTTCACCTATAGAGATGGATAAG 848
Query 556 TATCGGTTGG-ATGTTATGGAAGATGAAATCAATTTGTTGGAAGAGAGACTTACTAGGGA 614
|||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 849 TATCGGTTGGAAGGTT-TGGAAAATGAAATCAATTTGTTGGAAGAGAGACTTACTCGGGA 907
Query 615 TGATCAAGAGATTGGTTTCTGTCACAACGATCTTCAGTACGGAAATGTCATGATTGATGA 674
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 908 TGATCAAGAGATTGGTTTCTGTCACAACGATCTTCAGTATGGAAATGTCATGATTGATGA 967
Query 675 AGAAACCAACGCCATTACCATCATAGACTATGAGTATTCGAGTTTCAACCCAATTGCTTA 734
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AGTAACCAATGCCATTACCATCATAGACTATGAGTATTCGAGTTTCAACCCAATTGCTTA 1027
Query 735 TGACATTGCAAACCACTTCTGTGAAATGGCTGCTAATTACCATTCAGACACTCCTCATGT 794
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1028 TGACATTGCAAACCACTTTTGTGAGATGGCTGCTAATTACCATTCAGACACTCCTCATGT 1087
Query 795 TCTGGATTACACTCTATATCCAGGAGAAGAAGAAAGGAGAAGGTTCATTAGAACATATCT 854
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1088 TCTGGACTACACTCTATATCCAGGAGAAGGAGAAAGGAGAAGGTTCATTAGCACATATCT 1147
Query 855 TGGCTCTACAGGGAATGCAACAAGTGAGGGAGAAATAGAGAGGTTATTGACTGATGCAGA 914
||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 1148 TGGCTCTACAGGGAATGCAACAAGTGATAAAGAAGTAGAGAGGTTATTGAAAGATGCAGA 1207
Query 915 GAGCTACACTTTAGCAAACCATATCTTCTGGGGATTATGGGGAATCATCTCGGGACATGT 974
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1208 GAGCTACACTTTAGCAAACCATATCTTCTGGGGACTATGGGGAATCATCTCGGGACATGT 1267
Query 975 GAACAAGATTGAGTTCGATTACATGGAATATGCAAGGCAGAGATTTGAACAGTACTGGCT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 GAACAAGATTGAGTTCGATTACATGGAATATGCAAGGCAGAGATTTGAACAGTACTGGCT 1327
Query 1035 TAGAAAGCCTTTGCTTCT 1052
||||||||||||||||||
Sbjct 1328 TAGAAAGCCTTTGCTTCT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53162377155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5