BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926527

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71740.1 | Symbols:  | unknown protein; Has 82 Blast hits to...   597    3e-170


> AT1G71740.1 | Symbols:  | unknown protein; Has 82 Blast hits 
to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:26987245-26987637 FORWARD 
LENGTH=393
Length=393

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 371/394 (94%), Gaps = 3/394 (1%)
 Strand=Plus/Plus

Query  21   ATGGCTCAGTCCGCTCCATCATCTCGAACGAAGCGGCTTACAGTTTTCAAGATGGGTTTA  80
            ||||||||| ||| |||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct  1    ATGGCTCAGACCGTTCCACCATCTCGAACGAAGCCGCTTACAATTTTCAAGATGGGTTTA  60

Query  81   GCCTCTGCAAGCGTCCGTTTGGTTAGCCTCGCTTCTCATTCGAAGAGGAAGCTTTGTCGT  140
            ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||
Sbjct  61   GCCTCTGCAAGCGTCCGATTGGTTAACCTTGCTTCTCATTCGAAGAGGAAGCTTCGTCGT  120

Query  141  TGGGTTACCTGTTATGGCTCTAGAGATTATGAACCTGTTATACATCTCCAAAATGACACG  200
            |||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct  121  TGGGCTGCCTGTTATGGCTCTAGAGATTATGAACCTGTTATATATCTCCAAAACGACATG  180

Query  201  ACGATGATGAACAATGGTGATGTTTATGATCCATACAACGGGGACCCGAGCATGTTGCTT  260
            ||||||||||||||||||| |||||||||   ||||||||| ||||||||||||||||| 
Sbjct  181  ACGATGATGAACAATGGTGGTGTTTATGA---ATACAACGGAGACCCGAGCATGTTGCTG  237

Query  261  AGTGGGGATCAGAGACGAGGTCCGCTGTGGCAGAAGAACATTCTCATGGGAGGAAAATGC  320
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  238  AGTGGGGATCAGAGACGAGGTCCGTTGTGGCAGAAGAACATTCTCATGGGAGGAAAATGC  297

Query  321  CAGCTTCCAGACTTCTCAGGTGTTATATTGTATGATGCTGATGGAAAAGTTGTTCCTCCG  380
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  298  CAGCTTCCAGATTTCTCAGGTGTTATATTGTATGATGCTGATGGACAAGTTGTTCCTCCG  357

Query  381  GCCAAGAACTCTCTTCCTTTGCTCACCTGGAAGT  414
            ||||||||||||||||||||||||||||||||||
Sbjct  358  GCCAAGAACTCTCTTCCTTTGCTCACCTGGAAGT  391



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5