BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926536
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 1757 0.0
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosp... 1064 0.0
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 843 0.0
> AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897005-26899434 REVERSE LENGTH=1960
Length=1960
Score = 1757 bits (951), Expect = 0.0
Identities = 1138/1227 (93%), Gaps = 18/1227 (1%)
Strand=Plus/Plus
Query 533 AAGCAGGTCAATTACATTATATCTCGCTTGCCAAAGCAACGGAGGACTGGCCTCTTTTCA 592
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 609 AAGCAGGTCAATTACATTATATCTCGCTTGCCAAAGCAACGTAGGACTGGCCTCTTTTCA 668
Query 593 GCTACACAAACAGAAGCTGTTGAAGAGCTGGCCAAGGCTGGCCTTAGGAACGCTGA-GAA 651
|||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||| | | |
Sbjct 669 GCTACACAAACACAAGCTGTTGCAGACCTGGCCAAGGCTGGCCTTAGGAATGCT-ATGGA 727
Query 652 AGTTATATTGCGAGCTGAGTC--A----AAAACGCCTTCTGGTCTGTATAGTGAGTATTT 705
|||||||| | |||||||||| | |||||| |||||||||||||| ||||||||||
Sbjct 728 AGTTATATCGGGAGCTGAGTCAAAGTCGAAAACGTCTTCTGGTCTGTATTGTGAGTATTT 787
Query 706 GAAATGCGAAGCAGATAAAAAGTCATCACAACTAGTGGATCTCCTGATCGAGAACAAAAA 765
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 788 AAAATGCGAAGCAGATCAAAAGTCATCACAACTAGTGCATCTCCTGATCGAGAACAAAAA 847
Query 766 TAAAAAGCTTCTCGTATTCTTTATGACCTGTGCTTCTGTTGATTACTGGGGACTCGTACT 825
|||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 848 TAAAAAGCTTGTCGTATTCTTCATGACATGTGCTTGTGTTGATTACTGGGGACTCGTACT 907
Query 826 TTCAAAAATTCCTACCCTCAAGTCCATTTCCTTC-TTTCCTATCCATGGGAAGATGAATC 884
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||
Sbjct 908 TTCAAAAATTCCTACCCTCAAGTCCATTTCCTTCTTTTCC-ACCCATGGGAAGATGGATC 966
Query 885 AGACTGCTCGAAG-CAAGGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCTTCTA 943
||| | | | || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AGAAAGGTAG-AGACACGGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCTTCTA 1025
Query 944 TGCACAGATGTCGCTGCACGAGGACTTGATATTCCAGGCATCGATTACGTTGTTCAGTAT 1003
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1026 TGCACAGATGTCGCTGCACGTGGACTTGACATTCCAGGCATCGATTACGTTGTTCAGTAT 1085
Query 1004 GATCCCCCACAAGACCCAGCTGTATTTATCCATAGGGTTGGCAGGACTGCAAGACTGGAA 1063
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1086 GATCCCCCACAAGACCCAGATGTATTTATCCATAGGGTTGGCAGGACTGCAAGAATGGAA 1145
Query 1064 AGACAAGGGAGGGCCATTGTGTTTTTAATGCCCAAGGAGAAAGACTATGTAGAGTTTATG 1123
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1146 AGACAAGGTAGGGCCATTGTGTTTTTAATGCCCAAGGAGACAGACTATGTAGAGTTCATG 1205
Query 1124 CGCATAAGAAAAGCCCCTCTTCAGAAGAGAAAATGCTCTGAGAACGCTTCCGATGTCATC 1183
||||| ||| | |||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1206 CGCATTCGAAGGGTCCCTCTTCAGGAGAGAAAATGCTCTGAGAACGCTTCTGATGTCATC 1265
Query 1184 CCGATTATACGTTCACTAGCCATGAAGGACCGGGAAGTGTTGGAGAAGGGATTAAAGGCA 1243
||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 1266 CCGATTATACGTTCACTAGCCATCAAGGACCGGGCAGTGTTGGAGAAGGGATTACAGGCA 1325
Query 1244 TTTGTTTCCTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGTTGGAAA 1303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1326 TTTGTTTCCTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTACATTTTCAGTTGGAAA 1385
Query 1304 GGACTTGAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTT-CAATATC 1362
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1386 GGACTTGAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTTACA-TATC 1444
Query 1363 TGAAGTTATACAAGACAGACTTGACATTGTCGGTTTTACACCTGTCGAAGGCATCACGTT 1422
|||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 1445 TGAAGTTAAACAAGACAGAATTGGCATTGTCGGTTTTACACCTGTCCAAGGCATCACGTT 1504
Query 1423 TGAGGACATAAAATTCAAGAACAAATCTCGGGAgaaacaaagacagcaaaacttactagc 1482
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TGAGGACATAAAATACAAGAACAAATCTCGGGAGAAACAAAGACAGCAAAACTTACTAGC 1564
Query 1483 aaggaaagaaaaactgcaacaagaaaagagagagaaaggcaagaaaagagagagaa-agG 1541
||||||||| |||||||||||||||||||||| |||| |||||||||| | || |||
Sbjct 1565 AAGGAAAGACAAACTGCAACAAGAAAAGAGAGGGAAACGCAAGAAAAGCTCCA-AAGAGG 1623
Query 1542 CGGTTGATGATTCTAACAAAGTGTCGAGAAAGAGAAAGTTAACGAAGAGGCAAAGACAAA 1601
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1624 CGGTTGATGATTCTAACAAAGCGTCGAGAAAGAGAAAGTTAACGGGGAGGCAAAGACAAA 1683
Query 1602 CTATCCAAACAGCTCGAGATGAAGAAGAAACGAATG-GAGATTATGGGTTACTGAAAAAA 1660
||||||||||||| | |||||||||||||| |||| |||||||| | |||||| |||||
Sbjct 1684 CTATCCAAACAGCGCAAGATGAAGAAGAAATGAATTTGAGATTATAGCTTACTGGAAAAA 1743
Query 1661 CTGAAGAAAGGTTCAATTACAGAAGATGAATTTGCAAAACGTACAGGAGCTGATGATTTT 1720
||||||||||| ||||||| ||||||||| ||||| |||| |||||||||| ||||||||
Sbjct 1744 CTGAAGAAAGGCTCAATTATAGAAGATGATTTTGCTAAACTTACAGGAGCTCATGATTTT 1803
Query 1721 GTCTGATAA-GAAGCAAGAAAACCTTT 1746
||||||||| ||||||||||||| |||
Sbjct 1804 GTCTGATAAAGAAGCAAGAAAACATTT 1830
Score = 697 bits (377), Expect = 0.0
Identities = 419/440 (95%), Gaps = 0/440 (0%)
Strand=Plus/Plus
Query 81 CTCCGCCGCGTTTCTCTGAACTCGAACCTCCGCTCTCCGAAGATATCATCGAGGCGCTTG 140
||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 88 CTCTGCCGCGTTTCTCTGAACTCAAACCTCCGCTCTCAGAAGATATCATCGAGGCGCTTG 147
Query 141 ACCGGTCCGGTTTCGAGTTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTACTCTGCA 200
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 148 ACCGGTCCGGTTTCGAGGTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTCCTCTGCA 207
Query 201 GCCACAAGGATGTTGTCGTCGACGCAGCAACTGGTTCTGGAAAAACCCTAGCTTTCCTCC 260
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 208 GCCACAAGGATGTTGTCGTCGACGCAGCCACTGGTTCTGGAAAAACCCTAGCTTTCCTCC 267
Query 261 TTCCCCTCGTAGAGATTCTCCGTCGATCGAACTCCTACCCTCCGAAGCCACACCAGGTTA 320
||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 268 TTCCCTTCATAGAGATTATCCGTCGATCCAACTCCTACCCTCCGAAGCCACACCAGGTAA 327
Query 321 TAGGGGTGATAATATCGCCAACGAGAGAGCTATCAACGCAGATACATAAGGTGGCACAGC 380
| |||||||| ||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 328 TGGGGGTGATTATATCGCCAACTAGAGAGCTATCAGCGCAGATACATAAGGTGGCAGAGC 387
Query 381 CGTTTGTCTCGACTTTGCCAAATGTGAACTCTGTCCTGCTTGTTGGAGGTCGAGAGGTGG 440
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CATTTGTCTCGACTTTGCCAAATGTGAACTCTGTCCTGCTTGTTGGAGGTCGAGAGGTGG 447
Query 441 AAGCTGACATGAATACTATCGAAGAAGAAGGAGCCAATATCTTGATCGGCACGCCTGGAA 500
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 448 AAGCTGACATGAATACTCTCGAAGAAGAAGGAGCCAATCTCTTGATCGGCACCCCTGGAA 507
Query 501 GGCTTTCAGATATAATGAAA 520
||||||||||||| ||||||
Sbjct 508 GGCTTTCAGATATGATGAAA 527
> AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612006-1615356
FORWARD LENGTH=2014
Length=2014
Score = 1064 bits (576), Expect = 0.0
Identities = 928/1093 (85%), Gaps = 44/1093 (4%)
Strand=Plus/Plus
Query 674 AAAACGCCTTCTGGTCTGT-ATAGTGAGTATTTGAAATGCGAAGCAGATAAAAAGTCATC 732
||||| ||||||||||| | || ||||||| || ||||||||||||||||||| |||||
Sbjct 801 AAAACCCCTTCTGGTCT-TCATCTTGAGTATATGGAATGCGAAGCAGATAAAAAATCATC 859
Query 733 ACAACTAGTGGATCTCCTGATCGAGAACAAAAATAAAAAGCTTCTCGTATTCTTTATGAC 792
||||||||| |||||||| ||| |||||| ||||||||||| | |||||||| |||||
Sbjct 860 ACAACTAGTTGATCTCCTCATCAAGAACAGTGATAAAAAGCTTATAGTATTCTTCATGAC 919
Query 793 CTGTGCTTCTGTTGATTACTGGGGACTCGTACTTTCAAAAATTCCTACCCTCAAGTCCAT 852
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 920 CTGTGCTTCTGTTGACTACTGGGGACTCGTACTTTCAAAAATTCCTGCCCTGAAGTCCAT 979
Query 853 TTCCTTCTTTCCTATCCATGGGAAGATGAATCAGACTGCTCGAAG-CAAGGCATTAGCTT 911
|| || |||||||||||||| | ||||| |||| ||| | || ||||||||||||||
Sbjct 980 ATCTTTAATTCCTATCCATGGGGATATGAAGCAGAATGCAAG-AGACAAGGCATTAGCTT 1038
Query 912 CGTTTAC-AGAGGCATCAAGCGGTGTCCTTCTATGCACAGATGTCGCTGCACGAGGACTT 970
||||||| | | |||||||| |||| |||||| |||||||| || |||||||| ||||||
Sbjct 1039 CGTTTACTA-AAGCATCAAGTGGTGCCCTTCTGTGCACAGACGTTGCTGCACGTGGACTT 1097
Query 971 GATATTCCAGGCATCGATTACGTTGTTCAGTATGATCCCCCACAAGACCCAGCTGTATTT 1030
|||||||||||||| ||||| |||||||||||||||||||||||||||||| | | ||
Sbjct 1098 GATATTCCAGGCATTGATTATGTTGTTCAGTATGATCCCCCACAAGACCCAAATATGTTC 1157
Query 1031 ATCCATAGGGTTGGCAGGACTGCAAGACT-GGAAAGACAAGGGAGGGCCATTGTGTTTTT 1089
| ||| |||| ||||| ||||||||| | || |||||||||||||||||||||||||||
Sbjct 1158 AACCACAGGGCCGGCAGAACTGCAAGATTAGG-AAGACAAGGGAGGGCCATTGTGTTTTT 1216
Query 1090 AATGCCCAAGG-AGAAAGACTATGTAGAGTTTATGCGCATAAGAAAAGCCCCTCTTCAG- 1147
| ||||||||| || ||| |||||||||||||||||||||||||| || |||| || |
Sbjct 1217 ACTGCCCAAGGAAG-AAGCCTATGTAGAGTTTATGCGCATAAGAAGAGTCCCT-TT-GGA 1273
Query 1148 A-AGAGAAAATGCTCTGAGAACGCTTCCGATGTCATCCCGATTATACGTTCA-CTAGCCA 1205
| ||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||
Sbjct 1274 AGAGAGAAAATGCTCTGAGGACGCATCCGATGTCATCCCGATTATACGTTCAGCT-GCCA 1332
Query 1206 TGAAGGACCGGGAAGTGTTGGAGAAGGGATTAAAGGCATTTGTTTCCTTTGTCCGTGCTT 1265
|||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGAAGGACCGAGCAGTGATGGAGAAGGGATTAAAGGCATTTGTTTCCTTTGTCCGTGCTT 1392
Query 1266 ATAAGGAGCATCACTGCTCTTTCATTTTCAGTTGGAAAGGAC-TTGAAATCGGAAAGTTA 1324
||||||||||||||||||||||||||||||| ||||||| || |||| || |||||||||
Sbjct 1393 ATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAAAG-ACCTTGAGATTGGAAAGTTA 1451
Query 1325 GCCATGGGATATGGCATCTTGTCTTTTCCTTCAATATCTGAAGTTATACAAGACAGACTT 1384
||||||||||||||| |||||| | |||||||||| |||||||||| |||| ||||||||
Sbjct 1452 GCCATGGGATATGGCCTCTTGTATCTTCCTTCAATGTCTGAAGTTAAACAACACAGACTT 1511
Query 1385 GACATTGTCGGTTTTACACCTGTCGAAGGCATCACGTTTGAGGACATAAAATTCAAGAAC 1444
|| || ||||| ||||| || ||||| ||| |||||| || |||||||||||| ||
Sbjct 1512 TCCAGTGAGGGTTTCACACCAGTTGAAGGTGTCAAGTTTGAAGAAATAAAATTCAAGGAC 1571
Query 1445 AAATCTCGGGAgaaacaaagacagcaaaacttactagcaaggaaagaaaaactgcaacaa 1504
|||| ||||||||||||||||||||||||||||| || ||||||||| |||| |||| ||
Sbjct 1572 AAATATCGGGAGAAACAAAGACAGCAAAACTTACAAGTAAGGAAAGAGAAACGGCAAGAA 1631
Query 1505 ga-aaagagagagaaaggcaaga-aaagagaga-gaaagG--CGGTT-G-A-TGATTCTA 1556
|| ||| | |||||||||||||| ||| || | || | | | | | | |||| |||
Sbjct 1632 GAGAAAAA-AGAGAAAGGCAAGAGAAAAAGGGTTGAT-GCTTCTGCTAGTAATGATCCTA 1689
Query 1557 ACAAAGTGTCGAGAAAGAGAAAGTTAACGAAGAGGCAAAGACAAACTATCCAAACAGCTC 1616
| |||| |||||||||| |||||| || |||||||||||||| ||||| |||
Sbjct 1690 AGAAAGCGTCGAGAAAG------TTAACGGGGAAACAAAGACAAACTATTCAAACTGCT- 1742
Query 1617 GA-GATGAAGAAGAAACGAATGGAGATTATGGGTT-ACTGAAAAAACTGAAGAAAGG-TT 1673
|| |||||||||| | | || |||||||| ||| | ||| |||| | |||||||| ||
Sbjct 1743 GAAGATGAAGAAGTGATGGATCGAGATTATAAGTTGA-TGATAAAAGTAAAGAAAGGGTT 1801
Query 1674 CAATTACAGAAGATGAATTTGCAAA-ACGTACAGGAGCTGATGATTT-TGTCTGATAAGA 1731
||||| ||||||||||| || ||| || |||||||| ||||||||| | |||||| |||
Sbjct 1802 -AATTAAAGAAGATGAATATG-AAAGACTTACAGGAGATGATGATTTAT-TCTGATGAGA 1858
Query 1732 AGCAAGAAAACCT 1744
|| || |||||||
Sbjct 1859 AGAAACAAAACCT 1871
Score = 497 bits (269), Expect = 1e-139
Identities = 378/432 (88%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 87 CGCGTTTCTCTGAACTCGAACCTCCGCTCTCCGAAGATATCATCGAGGCGCTTGACCGGT 146
|||||||||| || ||||||||||| ||||||| ||||||||| ||||| ||| | | ||
Sbjct 112 CGCGTTTCTCCGACCTCGAACCTCCACTCTCCGGAGATATCATTGAGGCTCTTAATCAGT 171
Query 147 CCGGTTTCGAGTTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTACTCTGCAGCCACA 206
| | |||||||||||||||||||||||| |||| |||||||||||||||||| || |||
Sbjct 172 CTGATTTCGAGTTCTGCACTCCGGTTCAAGCCGCGACGATCCCTTTACTCTGTAGTTACA 231
Query 207 AGGATGTTGTCGTCGACGCAGCAACTGGTTCTGGAAAAACCCTAGCTTTCCTCCTTCCCC 266
||||||||| ||||||||| || ||||||||||||||||||||||||||| || ||||||
Sbjct 232 AGGATGTTGCCGTCGACGCTGCCACTGGTTCTGGAAAAACCCTAGCTTTCGTCGTTCCCC 291
Query 267 TCGTAGAGATTCTCCGTCGATCGAACTCCTACCCTCCGAAGCCACACCAGGTTATAGGGG 326
||||||| || ||||||||||| | ||| | |||||||||||| |||||||| || ||||
Sbjct 292 TCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGGTCATGGGGG 351
Query 327 TGATAATATCGCCAACGAGAGAGCTATCAACGCAGATACATAAGGTGGCACAGCCGTTTG 386
|||| ||||||||||||||||||||||||||||||||| |||| || ||||| || ||||
Sbjct 352 TGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATATAATGTCGCACAACCATTTG 411
Query 387 TCTCGACTTTGCCAAATGTGAACTCTGTCCTGCTTGTTGGAGGTCGAGAGGTGGAAGCTG 446
| ||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 412 TTTCGACTTTGGCAAATGTGAACTCTGTGTTGCTTGTTGGAGGCCGAGAGGTGAAAGCTG 471
Query 447 ACATGAATACTATCGAAGAAGAAGGA-GCCAATATCTTGATCGGCACGCCTGGAAGGCTT 505
||||||| | ||| |||||||||||| || ||| ||||||| || || |||||||| |||
Sbjct 472 ACATGAAGATTATTGAAGAAGAAGGATGC-AATGTCTTGATTGGTACACCTGGAAGACTT 530
Query 506 TCAGATATAATG 517
|| ||||| |||
Sbjct 531 TCTGATATTATG 542
Score = 156 bits (84), Expect = 8e-37
Identities = 124/142 (87%), Gaps = 8/142 (6%)
Strand=Plus/Plus
Query 535 GCAGGTCAATTACATTATATCTCGCTTGCCAAAGCA-ACGGAGGACTGGCCTCTTTTCAG 593
|||||| ||||||||||| || |||||||||||||| | |||||||||||||||||||||
Sbjct 629 GCAGGTGAATTACATTATCTCACGCTTGCCAAAGCAGA-GGAGGACTGGCCTCTTTTCAG 687
Query 594 CTACACAAACAGAAG-CTGTTGAAGAGCTGGCCAAGGCTGGCCTTAGGAACGCTGAGAAA 652
||||||||||||| | | ||||||||||| ||||||||||| ||||||||| ||| || |
Sbjct 688 CTACACAAACAGAGGGC-GTTGAAGAGCTCGCCAAGGCTGGGCTTAGGAACCCTGTGAGA 746
Query 653 GTT-ATA-TTGCGAGCTGAGTC 672
||| | | || |||||| ||||
Sbjct 747 GTTGA-AGTT-CGAGCTAAGTC 766
> AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870141-26872152 REVERSE LENGTH=1519
Length=1519
Score = 843 bits (456), Expect = 0.0
Identities = 527/561 (94%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 1190 ATACGTTCACTAGCCATGAAGGACCGGGAAGTGTTGGAGAAGGGATTAAAGGCATTTGTT 1249
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 ATACGTTCACTAGCCATCAAGGACCGGGAAGTGTTGGAGAAGGGATTAAAGGCATTTGTT 999
Query 1250 TCCTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGTTGGAAAGGACTT 1309
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1000 TCCTTTGTCCGTGCTTATAAGGAGCATCAATGCTCTTACATTTTCAGTTGGAAAGGACTT 1059
Query 1310 GAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTT-CAATATCTGAAGT 1368
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1060 GAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTTACA-TATCTGAAGT 1118
Query 1369 TATACAAGACAGACTTGACATTGTCGGTTTTACACCTGTCGAAGGCATCACGTTTGAGGA 1428
|| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1119 TAAACAAGACAGAATTGGCATTGTCGGTTTTACACCTGTCCAAGGCATCACGTTTGAGGA 1178
Query 1429 CATAAAATTCAAGAACAAATCTCGGGAgaaacaaagacagcaaaacttactagcaaggaa 1488
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1179 CATAAAATTCAAGAACAAATCTCGGGAGAAACAAAGGCAGCAAAACTTATTAGCAAGGAA 1238
Query 1489 agaaaaactgcaacaagaaaagagagagaaaggcaagaaaagagagagaa-agGCGGTTG 1547
||| |||||||||||||||||||||| |||| |||||||||| | || |||||||||
Sbjct 1239 AGACAAACTGCAACAAGAAAAGAGAGGGAAACGCAAGAAAAGCTCCA-AAGAGGCGGTTG 1297
Query 1548 ATGATTCTAACAAAGTGTCGAGAAAGAGAAAGTTAACGAAGAGGCAAAGACAAACTATCC 1607
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1298 ATGATTCTAACAAAGCGTCGAGAAAGAGAAAGTTAACGGGGAGGCAAAGACAAACTATCC 1357
Query 1608 AAACAGCTCGAGATGAAGAAGAAACGAATG-GAGATTATGGGTTACTGAAAAAACTGAAG 1666
||||||||| |||||||||||||| |||| |||||||| | ||||||||||||||||||
Sbjct 1358 AAACAGCTCAAGATGAAGAAGAAATGAATTTGAGATTATAGCTTACTGAAAAAACTGAAG 1417
Query 1667 AAAGGTTCAATTACAGAAGATGAATTTGCAAAACGTACAGGAGCTGATGATTTTGTCTGA 1726
||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||
Sbjct 1418 AAAGGTTCAATTACAGAAGATGATTTTGCTAAACTTACAGGAGCTCATGATTTTGTCTGA 1477
Query 1727 TAA-GAAGCAAGAAAACCTTT 1746
||| |||||||||||||||||
Sbjct 1478 TAAAGAAGCAAGAAAACCTTT 1498
Score = 532 bits (288), Expect = 3e-150
Identities = 393/439 (90%), Gaps = 26/439 (6%)
Strand=Plus/Plus
Query 83 CCGCCGCGTTTCTCTGAACTCGAACCTCCGCTCTCCGAAGATATCATCGAGGCGCTTGAC 142
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 40 CCGCCGCGTTTCTCTGAACTCAAACCTCCGCTCTCAGAAGATATCATCGAGGCGCTTGAC 99
Query 143 CGGTCCGGTTTCGAGTTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTACTCTGCAGC 202
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 100 CGGTCCGGTTTCGAGGTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTCCTCTGCAGC 159
Query 203 CACAAGGATGTTGTCGTCGACGCAGCAACTGGTTCTGGAAAAACCCTAGCTTTCCTCCTT 262
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 160 CACAAGGATGTTGTCGTCGACGCAGCCACTGGTTCTGGAAAAACCCTAGCTTTCCTCCTT 219
Query 263 CCCCTCGTAGAGATTCTCCGTCGATCGAACTCCTACCCTCCGAAGCCACACCAGGTTATA 322
||| || |||||||| |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 220 CCCTTCATAGAGATTATCCGTCGATCCAACTCCTACCCTCCGAAGCCACACCAGGTAATG 279
Query 323 GGGGTGATAATATCGCCAACGAGAGAGCTATCAACGCAGATACATAAGGTGGCAC-AGCC 381
|||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 280 GGGGTGATTATATCGCCAACGAGAGAGCTATCAGCGCAGATACATAAGGTGGCAAGAGCC 339
Query 382 GTTTGTCTCGACTTTGCCAAATGTGAACTCTGTCCTGCTTGTTGGAGGTCGAGAGGTGGA 441
||| |||||||||||||||||||| | | | |||| | || |
Sbjct 340 GTTCGTCTCGACTTTGCCAAATGT---C---GA---G--------AGGT-G-GA-----A 375
Query 442 AGCTGACATGAATACTATCGAAGAAGAAGGAGCCAATATCTTGATCGGCACGCCTGGAAG 501
||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 376 -GCTGACATGAATACTCTCGAAGAAGAAGGAGCCAATCTCTTGATCGGCACCCCTGGAAG 434
Query 502 GCTTTCAGATATAATGAAA 520
|||||||||||| ||||||
Sbjct 435 GCTTTCAGATATGATGAAA 453
Score = 416 bits (225), Expect = 3e-115
Identities = 270/292 (92%), Gaps = 2/292 (1%)
Strand=Plus/Plus
Query 701 TATTTGAAATGCGAAGCAGATAAAAAGTCATCACAACTAGTGGATCTCCTGATCGAGAAC 760
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 649 TATTTGAAATGCGAAGCAGATCAAAAGTCATCTCAACTAGTGCATCTCCTGATCGAGAAC 708
Query 761 AAAAATAAAAAGCTTCTCGTATTCTTTATGACCTGTGCTTCTGTTGATTACTGGGGACTC 820
||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 709 AAAAATAAAAAGCTTGTCGTATTCTTCATGACATGTGCTTGTGTTGATTACTGGGGACTC 768
Query 821 GTACTTTCAAAAATTCCTACCCTCAAGTCCATTTCCTTCTTTCCTATCCATGGGAAGATG 880
||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 769 GTAATTTCAAAAATTCCTAGCCTCAAGTCCATTTCCTTCTTTCCCACCCATGGGAAGATG 828
Query 881 AATCAGACTGCTCGAAG-CAAGGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCT 939
|||||| | | | || || |||||||||||||||||||||||||||||||||||||||
Sbjct 829 GATCAGAAAGGTAG-AGACACGGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCT 887
Query 940 TCTATGCACAGATGTCGCTGCACGAGGACTTGATATTCCAGGCATCGATTAC 991
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 888 TCTATGCACAGATGTCGCTGCACGTGGACTTGACATTCCAGGCATCGTTTAC 939
Score = 182 bits (98), Expect = 1e-44
Identities = 106/110 (96%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 533 AAGCAGGTCAATTACATTATATCTCGCTTGCCAAAGCAACGGAGGACTGGCCTCTTTTCA 592
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 535 AAGCAGGTCAATTACATTATATCTCGCTTGCCAAAGCAACGTAGGACTGGCCTCTTTTCA 594
Query 593 GCTACACAAACAGAAGCTGTTGAAGAGCTGGCCAAGGCTGGCCTTAGGAA 642
|||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 595 GCTACACAAACACAAGCTGTTGCAGACCTGGCCAAGGCTGGCCTTAGGAA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5