BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926556
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71970.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1055 0.0
> AT1G71970.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G22680.1);
Has 58 Blast hits to 58 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:27093028-27094027
FORWARD LENGTH=1000
Length=1000
Score = 1055 bits (571), Expect = 0.0
Identities = 672/721 (93%), Gaps = 6/721 (1%)
Strand=Plus/Plus
Query 1 TTTTCTTCTTCTTCTTCCTTATGGATTCTTCAAGAACCCGAAATGTATCCAAACGATCCG 60
||||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||
Sbjct 52 TTTTCTTCTTCTTCTTCCTCATGGATTCTTTAAGAACTCGAAATGTATCCAAAAGATCCG 111
Query 61 ATCCGGTCAACTTTCCGGCGAAGTCATCCATTTCATCACGGAGATCTTTATCTTCTTCTT 120
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 112 ATCCGATCAACTTTCCGGCGAAGTCATCCATTTCATCCCGGAGATCATTATCTTCTTCTT 171
Query 121 CTTCCTTCTCGTCTTTTTCCTCCTGCTCCTCTAGCTCCCTCGTATTTCCCGGCGACTCTC 180
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 172 CTTCCTTCTCATCTTTTTCCTCCTGCTCCTCTAGCTCCCTTGTCTTTCCCGGCGACTCTC 231
Query 181 CTTTAAACTCTCCGGCGACTCCTCTCCGTCTCCTTGGCGTCCCTTTCTCCTGGGAACAAC 240
|| | || ||||||||||||||||||||||| || || |||||||| || ||||||||||
Sbjct 232 CTCTGAATTCTCCGGCGACTCCTCTCCGTCTACTCGGTGTCCCTTTTTCATGGGAACAAC 291
Query 241 TTCCCGGAAAACCAAAAGACTACTCTCATAGACTCAACAACCGTCGAAACAATGAATCTT 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTCCCGGAAAACCTAAAGACTACTCTCATAGACTCAACAACCGTCGAAACAATGAATCTT 351
Query 301 CAAA--TA-TACTACCCCTTCCTCCTCACCGGAATCTTTCCTTTCCGACCACCGGaaaaa 357
|||| || | |||||||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct 352 CAAATCTATTGCTACCCCTCCCTCCTCACCGGAATATTTCCTTTCCGGCCACCGGAAAAA 411
Query 358 aaCCTAAACCTAACAATTCCAGTAAGAAGAACAACTTCCCCGTTACCGTAAGAGATCCCT 417
||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 412 AACCTAAACCTAACAATTCCAGTAAGAAGAACAGCTTCCCCGTGACCGGAAAAGATCCCT 471
Query 418 TCGCGGCTGCGTTGTTGGAATGTTCCAAAGACGAAGGAACAAACAGTGACGACGACGATG 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 472 TCGCGGCTGCGTTGTTGGAATGTTCCAAAGACGAAGGAACAAACAGTGACAACGATGATG 531
Query 478 ACGTTGACGGTGGTGAAGACGTAGATCGGAGGTTTCGAGGAAATTCCGGTGGTCCGAGCA 537
|||| ||||||| ||||||||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 532 ACGTCGACGGTGTTGAAGACGTAGATCGAAGGTTTCGAGGAAACTCCGGTGGTTCAAGCA 591
Query 538 AGGTGTTGTCAAAGAACAGCTTCGGAGACAGGTTTGGGTTAGTGAATCTCTACGGTTCTT 597
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 592 AGGTGTTGTCAAAGAACAGCATCGGAGACAGGTTTGGGTTAGTAAATCTCTACGGTTCTT 651
Query 598 GTCGGAGAACTTGTGCAGTTTCAGAGTCCATTGTTTATCTTCCAAGATCAAGAAAAACTG 657
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 652 GTCGGAGAACTTGTGCAGTAACAGAGTCCATTGTTTATCTTCCAAGAGCAAGAAAAGCTG 711
Query 658 CTTCGTACGATAATCTTCTTCTTCCTCGTCGTCGCCGTTGATTTGTTCGTATTTGGTGAT 717
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 712 CTTCGTACGATAATCTTCTTC--CA-CGTCGTCGCTGTTGATTTGTTCGTATTTGGTGAT 768
Query 718 T 718
|
Sbjct 769 T 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5