BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926558
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71990.1 | Symbols: FUT13, ATFUT13, FUCTC, FT4-M, ATFT4 | fu... 1914 0.0
> AT1G71990.1 | Symbols: FUT13, ATFUT13, FUCTC, FT4-M, ATFT4 |
fucosyltransferase 13 | chr1:27100284-27102262 FORWARD LENGTH=1432
Length=1432
Score = 1914 bits (1036), Expect = 0.0
Identities = 1177/1246 (94%), Gaps = 6/1246 (0%)
Strand=Plus/Plus
Query 1 TTTAAGGAATCAATCTCACCATGCCAATGAGACACCTCAACGCTATGGCCACTTTACTAA 60
||||||||||||||| |||||||||||||||| |||||||||| |||||| || ||||||
Sbjct 42 TTTAAGGAATCAATCACACCATGCCAATGAGATACCTCAACGCAATGGCCGCTCTACTAA 101
Query 61 TGATGTTCTTTACTCTCTTGATCCTCTCTTTCACAGGCATTTTAGAATTCCCATCTGCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 TGATGTTCTTTACTCTCTTGATCCTCTCTTTCACAGGCATTTTAGAATTCCCATCTGCTT 161
Query 121 CAACTTCGATGGAGCATTCAATAGACCCGGAACCGAAATTATCTGATCCAACATCGGATC 180
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 162 CAACTTCGATGGAGCATTCAATAGACCCGGAACCGAAATTGTCTGATTCAACATCGGATC 221
Query 181 CATTCAGTGATATCCTCGTAGCTTATAAAAAATGGGACTTTGAAGTGGGTTGTGCTCGGT 240
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CATTCAGTGATGTTCTTGTAGCTTATAAAAAATGGGACTTTGAAGTGGGTTGTGCTCGGT 281
Query 241 TTAAGGAGAATCACAAAGATTCGATTTGGGGCAATGTTAGTTCGGGTTCTTTACAAGAAT 300
||| ||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 282 TTAGGGAGAATCATAAAGATGCGATTTTGGGTAATGTTAGTTCGGGTTCTTTACAAGAAT 341
Query 301 TTGGTTGTGGTAAGCTTAAGATGGATCATGTTAAGGTTTTGGTTAAAGGGTGGACTTGGA 360
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 342 TTGGTTGTGGTAAGCTTAAGATGAAGCATGTTAAGGTATTGGTTAAAGGGTGGACTTGGA 401
Query 361 TTCCTGATAATTTGGAAAATTTGTATTCTTGTCGTTGTGGGATGACTTGTTTGTGGACTA 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTCCGGATAATTTGGAAAATTTGTATTCTTGTCGTTGTGGGATGACTTGTTTGTGGACTA 461
Query 421 AATCATCGGTTTTGGCTGATTCACCTGATGCTTTGTTGTTTGAGACAACAACTCCTCCGC 480
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 462 AATCATCGGTTTTGGCTGATTCACCTGATGCTTTGTTGTTCGAGACAACAACTCCTCCAC 521
Query 481 TACAGAGACGTGTTGGAGATCCGCTCCATGTGTACATGGAGCTAGAGGCTGGAAGAAAAC 540
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 522 TACAGAGACGTGTTGGAGATCCGCTCCGTGTGTACATGGAGCTAGAGGCCGGAAGAAAAC 581
Query 541 GCTCAGGCCGTGAAGATATATTCATTAGCTACCATGCCAAAGACGATGTCCAAACTACTT 600
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 582 GCTCAGGCCGTGAAGATATATTCATCAGCTACCATGCGAAAGACGATGTCCAAACAACTT 641
Query 601 ATGCGGGTTCGCTCTTTCATAATAACAGAAACTATCACATCTCTCCACATAAAAACAATG 660
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ACGCCGGTTCGCTCTTTCATAATAACAGAAACTATCACATCTCTCCACATAAAAACAATG 701
Query 661 ATGTTTTGGTGTATTGGTCTTCCTCAAGATGCCTCCCTCACAGAGACCGTCTTGCAAAGA 720
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 702 ATGTTCTGGTGTATTGGTCTTCCTCAAGATGCCTCCCTCACAGAGATCGTCTAGCAAAGA 761
Query 721 GCCTACTCGATCTGATTCCCCACCACTCCTTTGGTAAGTGTCTTAACAATGTCGGTGGCT 780
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 762 GCCTACTCGATTTGATTCCCCACCACTCCTTTGGTAAGTGTCTTAACAATGTTGGTGGCT 821
Query 781 TGGACGCAGCTCTCTCTATGTATCCAGAATGTGTCTCCGA-CTCTAACGCTGA-GACAAA 838
||||| ||||||||||||||||||||||||||||| | || | | |||||||| | ||||
Sbjct 822 TGGACTCAGCTCTCTCTATGTATCCAGAATGTGTCGCTGAGCAC-AACGCTGAAG-CAAA 879
Query 839 ATGGTATGACCATCTCCACTGCGCTATGTCACACTACAAATTCGTCCTTGCAATTGAAAA 898
|||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 880 ATGGTACGATCACCTCCACTGCGCTATGTCACACTACAAATTCGTCCTTGCAATCGAAAA 939
Query 899 CACAGCTGTTGAGTCATACGTGACCGAGAAGCTTTTCTATGCGCTCGACTCGGGTTCTGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 940 CACAGCTGTTGAGTCATACGTGACCGAGAAGCTTTTCTATGCGCTCGACTCTGGTTCTGT 999
Query 959 TCCGATCTACTTCGGAGCCTCTAACGTTG-AAGACTTTGTCCCTCCGCATTCCGTGATCG 1017
||| ||||| || || ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1000 TCCAATCTATTTTGGGGCCTCTAACGT-GCAAGACTTTGTCCCTCCGCATTCCGTGATCG 1058
Query 1018 ACGGTAGCAAATTCGGCTCGATGCAGGAATTGGCGGCGTACGTGAAGCGGCTCGGCGATG 1077
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1059 ATGGTAGCAAATTCGGCTCGATGCAGGAGTTGGCTGCGTACGTGAAGCGGCTCGGTGATG 1118
Query 1078 ATCCTGTGGCTTACTCAGAGTACCACGCTTGGAGGAGGTGTGGACTGATGGGGAACTACG 1137
||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct 1119 ATCCTGTGGCTTACTCAGAGTACCATGCGTGGAGGCGGTGTGGACTAATGGGGAACTACG 1178
Query 1138 GGAAAACCCGCGCAGTGAGTCTAGATACATTGCCGTGTCGGTTGTGCGAAGAGATTAGCA 1197
|||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1179 GGAAAACCCGTGCGGTGAGTCTCGATACATTGCCATGTCGGTTGTGCGAAGAGATTAGCA 1238
Query 1198 GAAGAGGCGGCAAGAACGCCGGAGTTTGACGAGCCACCGGTGGTTT 1243
||||||| || |||||||||||||||||| ||||||| |||||||
Sbjct 1239 GAAGAGGTGGGAAGAACGCCGGAGTTTGATGAGCCACATGTGGTTT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5