BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926560
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72010.1 | Symbols: | TCP family transcription factor | ch... 1960 0.0
> AT1G72010.1 | Symbols: | TCP family transcription factor |
chr1:27107567-27109275 FORWARD LENGTH=1709
Length=1709
Score = 1960 bits (1061), Expect = 0.0
Identities = 1320/1438 (92%), Gaps = 45/1438 (3%)
Strand=Plus/Plus
Query 6 ATAGTTTCTTCCTGCAATCACACCATTCATATCCACTTGTTTTTAt-ctctctcaatca- 63
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATAGTTTCTTCCTGCAATCACACCATTCATATCCACTTGTTTTTATCCT-TCTCAATCAT 59
Query 64 t-tctc-tctctctccctctctGTTCACAAACTCCA--TTA-TAG-TAGCTTAGA--T-C 114
| |||| ||||||||||||||||||| ||||||||| ||| ||| |||||||| | |
Sbjct 60 TCTCTCTTCTCTCTCCCTCTCTGTTCTCAAACTCCATTTTAGTAGCAAGCTTAGATCTCC 119
Query 115 TCCTTCCACAGTCAC-TGCTCTTC-TT-T-T-C-----TTTCTTCAATCGA-TTGCTTCA 163
||||||||||||||| | |||||| || | | | ||||||||||||| ||||||||
Sbjct 120 TCCTTCCACAGTCACTTTCTCTTCTTTCTCTGCTTTTGTTTCTTCAATCGATTTGCTTCA 179
Query 164 GATTTCCCCAGATTTTAGAGAATTCGATATCAAGACTCAGAATTCACATGGGTTTTGTTT 223
|||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| |
Sbjct 180 GATTTCCCCAGATTATATAGAATTCGATGTCAAGACACAGAATTCACATGGGTTTTGTCT 239
Query 224 AAAAATCACTTCTTTTTA-AGGTTTTGA-AGA-TGGAAATTCGCACCAATCAGAATTCCT 280
|||||||| | | | | |||| | || | | || | | |||||||||||||
Sbjct 240 AAAAATCA-TAAAAATCATATCTTTTTACGGATTTG-AA---G-ATGAATCAGAATTCCT 293
Query 281 CTGTTGCGGAGGCGACGCTTCAGCTTAATTCCGGTGATAAACCGTCGCCGGGATCAATTC 340
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 294 CTGTTGCGGAGGCGACGCTTCAGCTTAATTCCGGTGAAAAACCATCGCCGGGATCGATTC 353
Query 341 CTTTTATCT-C-C-GGTCAACACGGAAACATAAGCACTTCAGCGACGAGTTCGACTAGCA 397
| ||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 354 CGTTTATCTCCTCTGGTCAACACGGAAACATAAGCACTTCAGCGACGAGTTCGACAAGCA 413
Query 398 CGAGTTCAGGTAGTGCTCTTGCCGTAGTTAAATCCGCCGTGAAAAAGCCGACTAAAGATC 457
| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 414 CAAGCTCAGGTAGTGCTCTTGCCGTAGTTAAATCCGCCGTGAAAAAACCAACTAAAGATC 473
Query 458 GGCACACGAAAGTCGATGGCCGTGGACGGCGAATTCGTATGCCGGCGATGTGCGCCGCTA 517
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGCATACTAAAGTCGATGGTCGTGGACGGCGAATTCGTATGCCGGCGATGTGCGCCGCTA 533
Query 518 GAGTTTTTCAGCTT-ACTAGAGAGTTAGGTCATAAATCTGATGGAGAGACCATCGAGTGG 576
||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 GAGTTTTTCAG-TTAACAAGAGAGTTAGGTCATAAATCTGATGGAGAAACCATCGAGTGG 592
Query 577 CTTCTCCAACAAGCTGAGCCAGCTATCATCGCTTCTACAGGTACCGGTACGATTCCGGCG 636
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 593 CTTCTCCAACAAGCTGAGCCAGCTATCATCGCTTCTACTGGTACTGGTACGATCCCGGCG 652
Query 637 AACTTCTCAAC-GTTAAACGCCTCTTTACGCAGTGGTGGCGGCTCCACCTTATTTTCTCA 695
|| |||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 653 AATTTCTCAACACTT-AACGCTTCTTTACGCAGTGGTGGTGGCTCCACCTTGTTTTCTCA 711
Query 696 GTCGTC-AAAGTCTTCTTCTTCGCCGCTCTCGTTTCATAGCACTGGAATGTCTCTTTATG 754
| |||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 712 GGCGTCGAAA-TCTTCTTCTTCGCCACTCTCGTTTCATAGCACTGGAATGTCTCTTTATG 770
Query 755 AAGATAATAACGGGACTAACGGATCATCGGTAGATCCTTCTAGGAAGTTGCTGAATTCAG 814
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 771 AAGACAATAACGGTACTAACGGATCATCGGTAGATCCTTCTAGGAAGTTACTGAATTCAG 830
Query 815 CCGCAAACGCGGCTGTTTTCGGTTTTCATCATCAGATGTATCCGCCAATAATGTCGACGG 874
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 831 CCGCAAACGCGGCTGTTTTCGGTTTTCATCATCAGATGTATCCACCAATAATGTCGACGG 890
Query 875 AGAGAAATCCGAGTAATTTAGTGAAACCTTATAGAGAAGATTACTTTAAGGAGCCGAGCT 934
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 891 AGAGAAATCCGAACACTTTAGTGAAACCTTATAGAGAAGATTACTTTAAGGAGCCGAGTT 950
Query 935 CTGCAGCGGAACCAAGCGAGAGTTCTCAGAAAGCGAGTCAGTTTCAGGATCAAGAGTTAG 994
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 951 CTGCAGCGGAACCAAGCGAGAGTTCTCAGAAAGCGAGTCAGTTTCAGGAGCAAGAGTTA- 1009
Query 995 GTTC-GGGTCGTGGGACGGCTAATGTGGTGCCTCAACCTATGTGGGCTGTTGCGCCGGGG 1053
| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1010 GCTCAGGGTCGTGGGACGGCTAATGTGGTGCCTCAACCTATGTGGGCGGTTGCGCCAGGG 1069
Query 1054 ACTACGAATGGAGGAAGTGCGTTCTGGATGCTTCCGATGAGCGGTTCGGGTGGGCGGGAG 1113
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 ACTACGAATGGAGGTAGTGCGTTCTGGATGCTTCCGATGAGCGGTTCGGGTGGGCGGGAG 1129
Query 1114 CAGTTGCAGCAGCAGCCGGGTCACCAAATGTGGGCGTTTAATCCAGGGAATTATCCGGTT 1173
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 CAGATGCAGCAGCAGCCTGGTCACCAAATGTGGGCGTTTAATCCAGGGAATTATCCAGTT 1189
Query 1174 GGGACAGGAAGAGTAGTAACCGCACCAATGGGGTCAATGATGTTGGGAGGTCAACAGCTA 1233
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GGGACAGGACGAGTAGTAACTGCACCAATGGGGTCAATGATGTTGGGAGGTCAACAGCTA 1249
Query 1234 GGATTAGGAGTGGCAGAGAACAATATGGCGGCTGCAATGCGTGGCAGTAGAGGCGATGGT 1293
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1250 GGATTAGGAGTGGCAGAGGGCAACATGGCGGCTGCAATGCGTGGCAGTAGAGGCGATGGT 1309
Query 1294 TTGGCCATGACTCTGGATCAACATCAGCATCAGCTCCAACATCAAGAGCCAAGCCAGACT 1353
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1310 TTGGCCATGACTCTAGATCAACATCAGCATCAGCTCCAACATCAAGAGCCAAACCAGAGT 1369
Query 1354 CAAGCTAGTGAAAACGGTGGTGATGACAAAAAGTGACCAATCGTCTTCTC-A-TTCCA 1409
|||||||||||||| ||||||||||||||||||||| ||||| | ||||| | |||||
Sbjct 1370 CAAGCTAGTGAAAATGGTGGTGATGACAAAAAGTGATCAATCCTTTTCTCTAGTTCCA 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69427353735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5