BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926563
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72040.1 | Symbols: | P-loop containing nucleoside triphosp... 2778 0.0
> AT1G72040.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:27111894-27114342
REVERSE LENGTH=2102
Length=2102
Score = 2778 bits (1504), Expect = 0.0
Identities = 1708/1804 (95%), Gaps = 23/1804 (1%)
Strand=Plus/Plus
Query 1 ATGCTCGTGT-AACGGAAACGATGCAGAAGATTCTGTGCAAAAGTACCACTTCTTCAACC 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 ATGCTCGTGTAAACGGAAACGATGCAGAAGATTCTGTGCAAAAGTACCACTTCTTCAACC 133
Query 60 CCTGTTCTCTCTACTCCGGTGAACTCTTTCGCCACCGGTTTTATCTCTCTAGGGTTTAAG 119
|||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 134 CCTGTTCTCTCTACGCCGGTGAACTCTCTCGCCGCCGGTTTTATCTCTCTAGGGTTTAAG 193
Query 120 ACCCCCGTCAAAAATCTCACTCCTTGTTCCAGTCCCAAACCTCTCTCTACTTGTTTCTTC 179
|||||||| ||||||||| |||||||||| | | | ||||||||||| ||||||||||||
Sbjct 194 ACCCCCGTTAAAAATCTCCCTCCTTGTTCTACTACTAAACCTCTCTCCACTTGTTTCTTC 253
Query 180 TCTACTTCCGCTATGCCGACGAGAACGGCTTCTCTTTCTTCAGGCGGTGTTGGTTTCTCT 239
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 254 TCTACTTCCGCTATGCCGACCACAACGGCTTCTGTTTCTTCAGGCGGTGTTGGTTTCTCT 313
Query 240 GCTTATCTACAGAGGAGTGTTAATAGACCGGCGCCGGCGTCGGTACGGTTCTCAACAGCT 299
|||||||||||||||| |||| ||| |||||| |||||||| || |||||||||||||||
Sbjct 314 GCTTATCTACAGAGGACTGTTCATAAACCGGCACCGGCGTCTGTTCGGTTCTCAACAGCT 373
Query 300 GCTTACCGGACTTGTCGGTGTTCAATCGACGGTACGAACGGGGCTTGGGTCGGTCGAACC 359
| |||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 374 GGTTACCGGACTTGCCGGTGTTCAATTGACGGTACGAACCGGGCTTGGGTTGGTCGAACT 433
Query 360 GGGACTTGGCGTGCTTTGTTTTGCTCAGACTCTACTGGTGGCTTAACCCCGGTTAATGCT 419
||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 434 GGGTCTTGGCGTGCGTTGTTTTGTTCAGACTCTACTGGTGGTTTAACCCCGGTTAATGCT 493
Query 420 ACTGCTGGAGCTGTGGTTGAGAGCGAAGG-TGACTCTGACGGAGAAGATGAAGAGGAGAA 478
||||||||||| |||||||| |||| ||| || ||||||||||||||| || || |
Sbjct 494 ACTGCTGGAGCAGTGGTTGAAAGCG-AGGAAGAGTCTGACGGAGAAGAT---GA--AG-A 546
Query 479 AGATAATGATTCGACGGATAAGGTTGAGAAGCCAGTGAGGATGAGCCGTAGAAATCGGAG 538
| | | || || || | ||||||||| |||||||||| ||||||||| |||||
Sbjct 547 CG---A-G----GA--GA-AA-GATGAGAAGCCTGTGAGGATGAACCGTAGAAACCGGAG 594
Query 539 CTCTAATGGAAGTGGTGAATTTGTTGGTAATCCAGATTTGCTTAAGATTCCTGGAGTTGG 598
||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 595 CTCTAGTGGAAGTGGTGAGTTTGTTGGTAATCCAGATTTGCTGAAGATTCCTGGAGTTGG 654
Query 599 TTTAAGGAATCAGAGAAAGCTTGTTGATAATGGGATTGGTGATGTTGCAGAGCTCAAGAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTTAAGGAATCAGAGAAAGCTTGTTGATAATGGGATTGGTGATGTTGCAGAGCTCAAGAA 714
Query 659 GCTCTATAAAGATAAGTTTTGGAAAGCAAGTCAGAAGATGGTTGATTATCTTAGGAGCTC 718
||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 715 GCTTTATAAGGATAAGTTTTGGAAGGCTAGTCAGAAGATGGTTGATTATCTTAGGAGCTC 774
Query 719 TGTTGGGATTATACATAGAAACCATGCGGAGAGTATAACAACGTTTATTAAAGAGAGTGT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TGTTGGGATTATACATAGAAACCATGCGGAGAGTATAACAACGTTTATTAAAGAGAGTGT 834
Query 779 GGATGATGAGCTAAAGGATTCTGGCCCTGAACCTAATGTAAATGTGAAGAAACGTTTGAC 838
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 835 GGATGATGAGCTTAAGGATTCTGGCCCTGAACCTAATCTAAATGTGAAGAAACGTTTGAC 894
Query 839 GTTTTGTGTTGAAGGGAACATTAGTGTTGGTAAATCAACTTTTCTTCAGAGGATAGCGAA 898
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTTTTGTGTTGAAGGGAACATCAGTGTTGGTAAATCAACTTTTCTTCAGAGGATAGCGAA 954
Query 899 TGAGACGGTTGAGTTACAAGACCTTGTTGAGATTGTTCCTGAGCCAGTTGATAAGTGGCA 958
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TGAGACTGTTGAGTTACAAGACCTTGTTGAGATTGTTCCTGAGCCAGTTGATAAGTGGCA 1014
Query 959 AGATGTTGGACCTGACCATTTCAATATATTGGATGCTTTCTACTCTGAGCCTCAGAGGTA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGATGTTGGACCTGACCATTTCAATATATTGGATGCTTTCTACTCTGAGCCTCAGAGGTA 1074
Query 1019 TGCTTATACTTTCCAGAACTATGTGTTTGTCACTCGGCTGATGCAGGAGAAAGAGTCTGC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGCTTATACTTTCCAGAACTATGTGTTTGTCACTCGGCTGATGCAGGAGAAAGAGTCTGC 1134
Query 1079 TTCTGGGGTTAAACCTCTCAGGCTGATGGAAAGGAGTGTCTTCAGTGACAGAATGGTGTT 1138
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1135 TTCTGGGGTTAAACCTCTCAGGTTGATGGAAAGGAGTGTCTTCAGTGACCGAATGGTGTT 1194
Query 1139 TGTGCGTGCGGTTCATGAAGCGAAATGGATGAATGAGATGGAGATCAGCATCTACGACTC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1195 TGTGCGTGCGGTTCATGAAGCGAAATGGATGAATGAGATGGAGATCAGCATTTACGACTC 1254
Query 1199 TTGGTTTGATCCGGTTGTCTCTTCTTTACCTGGACTTGTTCCTGATGGGTTTATATACTT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTGGTTTGATCCGGTTGTCTCTTCTTTACCTGGACTTGTTCCTGATGGGTTTATATACTT 1314
Query 1259 AAGGGCAAGTCCAGACACTTGCCACAAGCGGATGATGCTCAGGAAACGAGCAGAAGAAGG 1318
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1315 AAGGGCGAGTCCAGACACTTGCCACAAGCGAATGATGCTCAGGAAACGAGCAGAAGAAGG 1374
Query 1319 TGGAGTCTCGCTGAAATACCTCCAAGATTTGCACGAGAAGCACGAGAGCTGGCTACT-CC 1377
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1375 CGGAGTCTCTCTGAAATACCTCCAAGATTTGCACGAGAAGCACGAGAGCTGGCTGCTTCC 1434
Query 1378 CGTTTGAGAGCGGAAACCATGGTGTATTGTCTGTTAGTAGGCCATCTTTACACATGGACA 1437
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1435 C-TTTGAGAGCGGAAACCATGGTGTATTGTCTGTTAGTAGACCATCTTTACACATGGACA 1493
Query 1438 ACTCTCTGCATCCTGATATAAAAGACCGTGTCTTTTACTTGGAAGGAAATCATATGCATT 1497
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1494 ACTCTCTGCATCCTGATATAAAGGACCGTGTCTTTTACTTGGAAGGAAATCATATGCATT 1553
Query 1498 CTAGTATCCAGAAGGTCCCTGCTCTGGTTTTGGACTGTGAACCTAATATCGACTTCAGCA 1557
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1554 CTAGTATCCAGAAGGTCCCTGCTCTGGTTTTGGACTGTGAACCCAATATCGACTTCAGCC 1613
Query 1558 AGGATACTGAAGCAAAGAAACAGTATGCACGCCAAGTTGCTGAGTTCTTTGAATTTGTGA 1617
||||| ||||||||||| ||||||||||||||| || |||||||||||||| |||||||
Sbjct 1614 GGGATATTGAAGCAAAGACACAGTATGCACGCCAGGTCGCTGAGTTCTTTGAGTTTGTGA 1673
Query 1618 AGAAGAAGCAAGAAACATCTACAGAGAAGAGCAACAGTCAGTCACCGGTACTGCTACCGC 1677
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1674 AGAAGAAGCAAGAAACATCTACAGAGAAGAGCAACAGTCAGTCGCCGGTACTGCTACCAC 1733
Query 1678 ATCAGAATGGCGGTCTCTGGATGGGACCAGCAGGCAATCATGTCCCGGGATTAGAACTCC 1737
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1734 ATCAGAATGGAGGTCTCTGGATGGGACCAGCAGGCAATCATGTCCCGGGATTAGATCTCC 1793
Query 1738 CGCCTCTAGATCTCAAGTCACTCCTCACCAGACCGTCTGCGTGACTGTCCATTCTCTGAC 1797
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1794 CGCCTCTAGATCTCAAGTCACTCCTCACTAGACCGTCTGCGTGACTGTCCATTCACTGAC 1853
Query 1798 TCTG 1801
||||
Sbjct 1854 TCTG 1857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89105967375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5