BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926567
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72090.1 | Symbols: | Methylthiotransferase | chr1:27123567... 3003 0.0
> AT1G72090.1 | Symbols: | Methylthiotransferase | chr1:27123567-27126895
FORWARD LENGTH=1984
Length=1984
Score = 3003 bits (1626), Expect = 0.0
Identities = 1773/1845 (96%), Gaps = 6/1845 (0%)
Strand=Plus/Plus
Query 1 CGCCGCCGTGGAGAGAGAAGCGAGAATGGAGGATATAGAGGATTTGTTGGCCGGAGGAGT 60
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 26 CGCCGCCGTGGAGAGAGAAGAGAGAATGGAGGATATCGAGGATTTGTTGGCCGGAGGAGT 85
Query 61 CGGTGGTGCACCACCGGGATTCCGATTACCGTTAAATGCGGTCGGGATTAATCCGAAGAC 120
|||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct 86 CGGTGGTGCACCACCGGGATTCCGATTACCCTTGAATGCAGTCGGAATTAATCCGAAGAC 145
Query 121 GAATAAGAGCAAACGTGTTAGCTCGAAACAGGATCAAATTACTGCTTCGAATCGTGACTC 180
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 146 GAATAAGAGCAAACGTATTAGCTCGAAACCGGATCAAATTACTGCTTCGAATCGTGACTC 205
Query 181 GCTTGCTCCACCATCGTTGAAGATTCCAGGAACTCAGACGATATACATCAAGACGTTTGG 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GCTTGCTCCACCATCGATGAAGATTCCAGGAACTCAGACGATATACATCAAGACGTTTGG 265
Query 241 ATGTTCTCATAATCAGAGTGATAGTGAGTATATGGCTGGTCAGCTTACTGCATTTGGCTA 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 266 ATGTTCTCATAATCAGAGTGATAGTGAGTATATGGCTGGTCAGCTTTCTGCATTTGGCTA 325
Query 301 TGCGTTGACAGAAGTCCCGGAGGATGCTGATTTATGGCTCATTAACACCTGTACTGTGAA 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 326 TGCGTTGACAGAAGTCCCGGAGGAAGCTGATTTATGGCTCATTAACACCTGTACTGTGAA 385
Query 361 ATCCCCTAGTCAGTCTGCAATGTCTACTTTGATAACGAGGGGTAGAAGTGGGAAAAAGCC 420
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GTCCCCTAGCCAGTCTGCGATGTCTACTTTGATAACGAGGGGTAGAAGTGGGAAAAAGCC 445
Query 421 TCTTGTGATAGCGGGATGTGTTCCTCAGGGCAGTCGTGATCTTAAAGAACTAGAAGGCGT 480
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 446 TCTTGTGATTGCGGGATGTGTTCCTCAGGGCAGTCGTGATCTTAAAGAACTGGAAGGCGT 505
Query 481 TAGTGTAGTTGGAGTTCAACAGATTGATCGTGTTGTTGAGATTGTTGAAGAAACTCTTAA 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 TAGTGTAGTTGGAGTCCAACAGATTGATCGTGTTGTTGAGATTGTTGAAGAAACTCTTAA 565
Query 541 GGGTCATGAAGTGA-GGCTGCTGACTCGGAAGACTTTGCCTGCGCTTGATCTCCCAAAGG 599
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GGGTCATGAAGT-ACGGTTGCTGACTCGGAAGACTTTGCCTGCGCTTGATCTCCCAAAGG 624
Query 600 TGCGGAAGAACAATTTTATCGAAATTCTCCCCATTAATGTTGGCTGTTTGGGTGCCTGTA 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TGCGGAGGAACAATTTTATCGAAATTCTCCCCATTAATGTTGGCTGTTTGGGTGCCTGTA 684
Query 660 CTTACTGCAAGACCAAGCACGCCCGTGGTCACTTAGGAAGCTACACAGTCGATAGCCTTG 719
||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||
Sbjct 685 CTTACTGCAAGACCAAGCATGCCCGTGGTCATTTAGGAAGTTACACAGTTGATAGTCTTG 744
Query 720 TGGAGCGGGTGAGAACTGTAATATCTGAAGGAGTCAAGGAGATTTGGTTGAGCAGTGAGG 779
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 745 TGGAGCGGGTGAGAACTGTAATCTCTGAAGGAGTCAAGGAGATTTGGTTAAGCAGCGAGG 804
Query 780 ACACTGGAGCATATGGTCGTGACATAGGAGTTAATCTTCCAATACTGCTTAATGCTATTG 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 805 ACACTGGAGCATATGGTCGTGACATAGGAGTTAATCTTCCAATACTGCTTAATGCTATCG 864
Query 840 TTAAGGAGCTTCCTTCTGATCAAAGCACAATGCTAAGGATTGGGATGACTAATCCTCCCT 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TTAAGGAACTTCCTTCTGATCAAAGCACAATGCTAAGGATTGGGATGACTAATCCTCCCT 924
Query 900 TTATTCTAGAGCATTTGAAAGAAATAGCAGCAGTGTTACGTCACCCATGTGTCTACACCT 959
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 925 TTATTTTAGAGCATTTGAAAGAAATAGCGGCAGTGTTACGTCACCCATGTGTCTACACCT 984
Query 960 TTCTTCATGTCCCTGTGCAATCTGGCAGTGATTCTGTGTTGACGGCCATGAACAGGGAAT 1019
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 985 TTCTTCATGTCCCTGTGCAATCTGGTAGCGATTCTGTGTTGACGGCCATGAACAGGGAAT 1044
Query 1020 ATACAGCAAGTGAGTTCAGGACTGTGGTAGACACCTTAACAGAGCTTGTGCCAGGAATGC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 ATACAGCAAGTGAGTTCAGGACTGTGGTAGACACCTTAACAGAGCTTGTGCCAGGAATGC 1104
Query 1080 AAATTGCTACTGATATAATATGCGGTTTTCCTGGTGAAACCGATGAAGATTTTTCCCAAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1105 AAATTGCTACTGATATAATATGCGGTTTTCCTGGTGAAACCGATGAAGATTTTTCTCAGA 1164
Query 1140 CAGTTGAACTTATCAAGGATTACAAGTTTCCTCAAGTTCATATTTCTCAGTTTTACCCCA 1199
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CAGTTGAACTCATCAAGGATTACAAGTTTCCTCAAGTTCATATTTCTCAGTTTTACCCCA 1224
Query 1200 GACCAGGGACCCCGGCAGCAAAGATGAAGAAGGTACAAAGTAAAATAGTGAAGCAACGAA 1259
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GACCAGGGACCCCAGCAGCAAAGATGAAGAAGGTACAAAGTAAAATAGTGAAGCAACGAA 1284
Query 1260 GCCGTGAATTGACTTCTGTCTTTGAGGCTTTTGCACCTTACACTGGAATGGAGGGCAGAG 1319
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 1285 GCCGTGAATTGACTTCTGTCTTTGAGGCTTTTGCGCCTTACACCGGAATGGAGTGCAGAG 1344
Query 1320 AAGAGAGGATATGGATAACCGAAGTAGCGACTGATGGAATTCATTTGGTTGGACATACGA 1379
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1345 AAGAGAGGATATGGATAACTGAAGTAGCTACTGATGGAATTCATTTGGTTGGACATACGA 1404
Query 1380 AGGGATATGTACAGGTCTTAGTTACTGGACCAGAAAGTATGCTTGGGACTTCAGCTATGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 AGGGATATGTACAGGTCTTAGTTACTGGACCAGAAAGTATGCTTGGGACTTCAGCTATGG 1464
Query 1440 CGAGGATAACATCTGTGGGGAGATGGTCAGTGTTTGGGGAAGTGATTGAGACATTTAGCT 1499
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1465 CGAGGATAACATCTGTGGGGAGATGGTCAGTATTTGGGGAAGTGATTGAGACATTTAGCT 1524
Query 1500 CTGCAAATAGAGAAACAAAATCCCGAGAGGAAACAAAGCCGCCTTGTTCGTCGACTGTTA 1559
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1525 CTGCAAATAGAGAAACAAAATCCCGAGAGGAAACAAAGCTGCCTTGTTCGTCGAATGTTA 1584
Query 1560 GTACTTGTGAGACTTGCACTTGCTCTGGTGAGAGCTGTGGAGAAGAGAGATCAGGAGAGG 1619
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1585 GCACTTGTGAGACTTGCACTTGCTCTGCTGAGAGCTGTGGAGAAGAGAGATCAGGAGAGG 1644
Query 1620 CGTGTAACATTTCTGGAAATATCTCAAGACAAGATGATCGA-AAGGGAGAGTCAGAGAAA 1678
|||||||||||||||||||||||||| ||||||||||| | |||||| ||||| |||||
Sbjct 1645 CGTGTAACATTTCTGGAAATATCTCAGGACAAGATGATA-ACAAGGGAAAGTCAAAGAAA 1703
Query 1679 CAAGAGACGGAGATGCGAGAGGTCGTCGTACCGAGAAGCAGTGTAGCAAATTGGGGTTTC 1738
|||||| |||| | | |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1704 GAAGAGAAGGAGGTACAAGAGGTCGTCGTACCGGGAAGCAGCGTAGCAAATTGGGGTTTC 1763
Query 1739 ATTGATAAGGCACTAGTGTGTGGAGTGTTCGTAAGCTCTCTCACCATTCTTGTTTTGTTG 1798
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1764 ATTGATAAGGCACTTGTCTGTGGAGTGTTCGTAAGCTCTGTCACCATTCTTGTTTTGTTG 1823
Query 1799 ATTAGTATAGCATCTAGAGTTTTGATGCG-TCAATGAATCTGTGT 1842
||||| || |||| |||||||||| |||| | |||||||| ||||
Sbjct 1824 ATTAGCATTGCATGTAGAGTTTTGCTGCGGT-AATGAATCAGTGT 1867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91766596260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5