BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926576
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72140.1 | Symbols: | Major facilitator superfamily protein... 2567 0.0
> AT1G72140.1 | Symbols: | Major facilitator superfamily protein
| chr1:27141814-27144490 FORWARD LENGTH=1875
Length=1875
Score = 2567 bits (1390), Expect = 0.0
Identities = 1609/1716 (94%), Gaps = 10/1716 (1%)
Strand=Plus/Plus
Query 1 TCTGAAACGAAATTATAAGAGGCAATGTCGTCATCCATCGCCGATAATGAGACTGGAACT 60
||||||||||||| | |||| ||||||||| ||||||||| |||||||||||||||| ||
Sbjct 40 TCTGAAACGAAATAACAAGAAGCAATGTCGACATCCATCGGCGATAATGAGACTGGAGCT 99
Query 61 ATTA-TTCCAAACGATAATGTCGAATACTCCGTTGATTTTCAAGGCAAGACATCAATCAG 119
| || || ||||||| |||||||| | ||||| ||||| | |||||| |||| |||||
Sbjct 100 A-TAGTTTCAAACGAGAATGTCGAGTTTTCCGTCGATTTCCGAGGCAATCCATCTATCAG 158
Query 120 ATCCTCCTCCGGTGCATGGAAATCCTCTGGCTTCACCATGTGTGCGGAAGTTGCGGAGAA 179
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 159 ATCCTCTTCCGGTGCATGGAAATCTTCTGGCTTCACCATGTGTGCGGAAGTTGCCGAGAA 218
Query 180 ATTCGCCTACTTCGGGATCGCCTCGAATCTGATAACCTACTTCACCGAGGCGTTAGGAGA 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 ATTCGCCTACTTCGGTATCGCCTCGAATCTGATAACCTACTTCACCGAGGCGTTAGGAGA 278
Query 240 GTCGACGGCGGTTGCAGCGTCAAACGTCAACCTTTGGCTCGGAACGGCAGCTTTTTTGCC 299
||||||||| ||||||||||||||||| ||||| ||||| || ||||||||||| |||||
Sbjct 279 GTCGACGGCTGTTGCAGCGTCAAACGTTAACCTCTGGCTTGGGACGGCAGCTTTCTTGCC 338
Query 300 TTTGATATGGGGTTCTATCGCCGACTCTTTTCTCGGCCGTTTTCGTACAATCCTCTTAAC 359
| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 339 TCTCATATGGGGTTCTATCGCCGACTCTTTTCTTGGCCGTTTCCGTACAATCCTCTTAAC 398
Query 360 CTCTTCTTTCTATATCATGGGACTTGGGCTGCTCACGTTTTCAGCGTCGATTCCTTCTCT 419
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 399 CTCTTCTTTCTATATCATGGGACTTGGGCTGCTTACGTTTTCAGCAACGATTCCTTCTCT 458
Query 420 TTGTAAAGGTCAAGAAAAACATGAGTCGTGTGTTC-CTCAAGTCAAAGTAATAGTCTTCT 478
|||||| | |||||||| || ||||||||| | || |||| |||||||||||| ||||||
Sbjct 459 TTGTAATGATCAAGAAACACGTGAGTCGTGCG-TCTCTCAGGTCAAAGTAATAATCTTCT 517
Query 479 TTTGTGCTCTCTATCTAATTGCTTTGGGCGAAGGAGGCTTTAAGGTATGTCTTAGAGCTT 538
||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||| |
Sbjct 518 TTTGTGCTCTCTACCTAATTGCTTTGGGAGAAGGAGGCTTCAAGGTATGTCTTCGAGCCT 577
Query 539 TTGGAGCAGATCAATTTGATGAACACGACCCTAAA-GAGTCCAAAGCCAAGAGTTCTTAC 597
||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 578 TTGGAGCAGATCAGTTTGATGAACAAGACCC-AAATGAGTCCAAAGCCAAGAGTTCTTAC 636
Query 598 TTTAACTGGTTGTACTTTGCGATATCAATCGGTATATTGACCACTCGGT-TGATCACAAA 656
|||||||||||||| ||||| ||||||||||| ||||||||||||| || || |||||||
Sbjct 637 TTTAACTGGTTGTATTTTGCTATATCAATCGGCATATTGACCACTC-GTCTGGTCACAAA 695
Query 657 TTATGTCCAAGAGAATCTGAGCTGGACTTTAGGATATGGGATTCCATGTCTTTCCATGAT 716
||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 696 TTATGTCCAAGAGAATCTGAGCTGGGCTTTAGGATATGCGATTCCATGTCTTTCTATGAT 755
Query 717 GCTTGCTCTGTTCTTGTTCTTACTTGGAATCAAAACTTACCGCTTTAGCACTGGAGGAGA 776
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 756 GCTTGCTCTATTCTTGTTCTTACTTGGAATCAAAACTTACCGCTTCAGCACCGGAGGAGA 815
Query 777 AGGAAGACAAGGCAGAAAACATGATAACCCTTTTGTTAGAATTGGCCGTGTTTTTGTGGC 836
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 AGGAAGACAGGGCAAAAAACATGATAACCCTTTTGTTAGAATTGGCCGTGTTTTTGTGGC 875
Query 837 TGCAGCTAGAAACCGGCGACAAACTCCTGATGATACTTGCCTTCTTCTGCC-AACAAAAA 895
|||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||
Sbjct 876 TGCAGCTAGAAACCGGCGACAAACTCCTTCTGATACTTGTCTTCTTCTGCCTAAC-GAAA 934
Query 896 GTTCCAAGAAATTCAGATTCCTAGACAGAGCGGTGATTTCGTGCGATTCATCTGAAGTTG 955
| ||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||
Sbjct 935 GCACCAAGAAATTCAGATTCTTGGACAGAGCGGTGATTTCATGCGATTCATATGAAGTTG 994
Query 956 AGGAAGCAAAAGCTGTGTTGAGTCTCGTTCCAATTTGGTTGTGTAGTTTGGTGTTTGGCA 1015
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 995 AGGAAGCAAAAGCTGTGTTGAGTCTCATTCCAATTTGGTTGTGTAGTTTGGTGTTTGGCA 1054
Query 1016 TTGTGTATGCGCAATCCCCTACTTTCTTCACAAAGCAAGGATCTACAATGGATAGATCAA 1075
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1055 TTGTGTTTGCGCAATCTCCTACTTTCTTTACAAAGCAAGGATCTACAATGGATAGATCAA 1114
Query 1076 TATCATCAACACTCCTAGTCCCTGCAGCTACACTCCAATGCTTCATAAGTCTAGCAATCC 1135
| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1115 TCTCATCAACACTCCAAGTCCCTGCAGCTACACTCCAATGCTTCATAAGCCTAGCAATCC 1174
Query 1136 TCGTCTTCATCCCAATCTACGACCGTGTATTCGTCCCAATCGCACGATCAATCACTCGTA 1195
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1175 TCGTCTTCATCCCAATCTACGACCGTTTATTCGTCCCAATCGCACGATCAATCACTCGTA 1234
Query 1196 AACCAGCAGGAATTACAACGCTTCAGAGAATTTCCACCGGCATTTTCCTCTCAATAATTT 1255
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1235 AACCAGCAGGAATTACAACCCTTCAGAGAATTTCCACCGGCATTTTCCTCTCAATTATTT 1294
Query 1256 CAATGGTAATAGCTGCTTTGGTCGAGATGAAAAGACTCAAGACCGCTCGAGATCACGGAC 1315
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1295 CAATGGTAATAGCTGCTTTGGTCGAGATGAAAAGACTCAAGACTGCTCGAGATCATGGAT 1354
Query 1316 TAGTTGATTCGCCTAAAGCCACGGTTCCAATGAGCGTTTGCTGGCTGATTCCACAATACA 1375
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1355 TAGTTGATTCGCCTAAAGCCACGGTCCCGATGAGCGTTTGCTGGCTGATTCCACAATACA 1414
Query 1376 TTCTCTTTGGAGTCTCCGACGTTTTCACTATGGTTGGTTTGCAAGAGTTTTTCTACGGAC 1435
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 TTCTCTTTGGAGTCTCTGACGTTTTCACTATGGTTGGTTTGCAAGAGTTTTTCTACGGAG 1474
Query 1436 AAGTCCCGCCAGAGCTTAGGAGCATGGGACTGGCTCTATATCTAAGCATAATCGGTATAG 1495
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1475 AAGTCCCGCCACAGCTTAGGAGCATGGGACTGGCTCTATATCTAAGCATAATCGGCATAG 1534
Query 1496 GAAACTTCTTGAGTAGCTTCATGGTATCGGTCATCGAGGAAGCCACAAGCCAGTCCGGTC 1555
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1535 GAAACTTCTTGAGTAGCTTCATGGTATCAGTCATCGAGGAAGCCACAAGCCAGTCCGGTC 1594
Query 1556 AAGTGAGCTGGTTCTCTAATAACCTGAACCAGGCACATCTTGATTACTTCTACTGGCTAC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 AAGTGAGCTGGTTCTCTAATAACCTGAACCAGGCACATCTTGATTACTTCTACTGGCTAC 1654
Query 1616 TTGCTTGTCTCAGCTCCCTCGCCTTCATTTTTATTGTCTATTTCGCCAAGTCTTATGTCT 1675
||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||
Sbjct 1655 TTGCTTGTCTCAGCTCCCTCGCCTTTATTTTTACTGTCTATTTTGCCAAGTCCTATCTCT 1714
Query 1676 ACAACAGCCCAAAGTAAACTCTCTAGCGATCTTGAG 1711
|||||||||||||||| ||||||||||||||||||
Sbjct 1715 ACAACAGCCCAAAGTAGTCTCTCTAGCGATCTTGAG 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84638118870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5