BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926577
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72150.1 | Symbols: PATL1 | PATELLIN 1 | chr1:27148460-27150... 1897 0.0
AT1G22530.1 | Symbols: PATL2 | PATELLIN 2 | chr1:7955493-795844... 867 0.0
> AT1G72150.1 | Symbols: PATL1 | PATELLIN 1 | chr1:27148460-27150980
FORWARD LENGTH=2148
Length=2148
Score = 1897 bits (1027), Expect = 0.0
Identities = 1164/1230 (95%), Gaps = 10/1230 (1%)
Strand=Plus/Plus
Query 481 GAGGAGAAACCTGAAGAGAAAGCAGAGGTAACCACCGAGAAAGCATCTACTGCTGAGGAA 540
|||||||||||||||||||||||||||||||| |||||||||||||| | ||| || |||
Sbjct 633 GAGGAGAAACCTGAAGAGAAAGCAGAGGTAACAACCGAGAAAGCATCCAGTGCCGAAGAA 692
Query 541 GATGGAACCAAGACTGTTGAAGCAATCGAAGAATCAATCGTCTCTGTTTCACCACCAGAA 600
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 693 GATGGAACCAAGACCGTGGAAGCAATCGAAGAATCTATCGTCTCTGTTTCACCACCTGAA 752
Query 601 TCCGCCGTCA-CACCGGTCGTGGTAGAGACTGTCGCCGTCGCTGAGCCAGAGCCAGTTGA 659
|||||||| | |||| ||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 753 TCCGCCGT-AGCACCTGTCGTGGTAGAGACTGTCGCCGTTGCTGAGGCAGAGCCAGTGGA 811
Query 660 GCCGGAAGAAGTCTCGATCTGGGGCGTTCCACTACTCCAAGACGAGAGATCTGACGTGAT 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 812 GCCGGAAGAAGTCTCGATCTGGGGAGTTCCACTACTCCAAGACGAGAGATCTGACGTGAT 871
Query 720 CCTCACGAAATTCCTCCGTGCAAGAGACTTCAAGGTCAAAGAAGCTTTAACCATGCTTAA 779
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 872 CCTCACGAAATTCCTCCGTGCAAGAGACTTTAAGGTCAAAGAAGCTTTAACCATGCTTAA 931
Query 780 AAACACCGTCCAGTGGCGTAAAGAAAACAAAATCGACGAGCTCGTCGAAGCCGCCGGAGA 839
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| | |||
Sbjct 932 AAACACCGTCCAGTGGCGTAAAGAAAACAAAATCGACGAACTCGTTGAATCCG--G-AGA 988
Query 840 AGAAGCGAGTGAGTTCGAGAAGATGGTGTTTGCTCACGGTGTTGACAAAGAAGGACACGT 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 AGAAGTGAGTGAGTTCGAGAAGATGGTGTTTGCTCACGGTGTTGACAAAGAAGGACACGT 1048
Query 900 CGTGATCTACAGCTCCTACGGTGAATTCCAGAACAAAGAACTTTTCTCCGACAAGGAGAA 959
|||||||||||| || |||||||| || |||||||| || ||||||||||||||||||||
Sbjct 1049 CGTGATCTACAGTTCTTACGGTGAGTTTCAGAACAAGGAGCTTTTCTCCGACAAGGAGAA 1108
Query 960 GCTTAACAAATTCCTCAACTGGAGGATTCAGCTACAAGAGAAGTGTGTGAGAGCTATTGA 1019
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 GCTTAACAAGTTCCTCAGCTGGAGGATTCAGCTACAAGAGAAGTGTGTGAGAGCTATTGA 1168
Query 1020 TTTCAGCAACCCCGAAGCGAAATCTTCGTTCGTATTCGTCAGCGACTTCAGGAACGCTCC 1079
|||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1169 TTTCAGCAACCCTGAAGCGAAGTCTTCGTTTGTGTTCGTCAGCGACTTCAGGAACGCTCC 1228
Query 1080 AGGACTCAAG-AAAAGAGCGTTGTGGCAATTCATCAGACGCGCTGTTAAACAATTCGAGG 1138
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 AGGACTTG-GTAAAAGAGCCTTGTGGCAATTCATCAGACGCGCTGTTAAACAATTCGAGG 1287
Query 1139 ACAATTACCCCGAATTCGCCGCAAAAGAGCTATTCATCAATGTCCCATGGTGGTACATTC 1198
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1288 ACAATTATCCTGAATTCGCCGCTAAAGAGCTATTCATCAATGTCCCATGGTGGTACATTC 1347
Query 1199 CTTACTACAAAACATTCGGATCTATCATCACATCGCCAAGGACTAGGAGCAAGATGGTCC 1258
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1348 CATACTACAAAACATTCGGATCTATCATCACATCCCCAAGGACTAGGAGCAAGATGGTCC 1407
Query 1259 TTGCTGGTCCATCCAAATCTGCCGATACTATTTTCAAATACATAGCTCCTGAACAAGT-C 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1408 TTGCTGGTCCATCCAAATCTGCCGATACTATTTTCAAATACATAGCTCCTGAACAAGTTC 1467
Query 1318 CCGGTTAAATACGGTGGACTTAGCAAAGATACTCCTTTGACCCAAGAAACCATAACCGAA 1377
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1468 CCG-TTAAATACGGTGGACTTAGCAAAGATACTCCTTTGACCGAAGAAACCATAACGGAA 1526
Query 1378 GCCATCGTTAAACCAGCAGCCAACTACACCATTGAATTGCCTGCTTCTGAGGCTTGCACA 1437
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1527 GCCATCGTTAAACCGGCAGCAAACTACACTATTGAATTGCCTGCTTCTGAGGCTTGCACG 1586
Query 1438 CTTTCGTGGGAGCTTAGGGTTTTGGGTGCTGACGTGAGCTACGGAGCTCAGTTTGAGCCA 1497
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1587 CTTTCATGGGAGCTTAGGGTTTTGGGTGCTGATGTGAGCTACGGAGCTCAGTTTGAGCCA 1646
Query 1498 ACCACTGAGGGAAGCTATGCTGTGATCGTCTCTAAAACCCGGAAGATTGGGTCAACCGAT 1557
||||| || |||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1647 ACCACCGAAGGAAGCTATGCTGTGATCGTCTCTAAGACACGGAAGATTGGATCAACCGAT 1706
Query 1558 GAACCGGTGATAACCGATTCTTTTAAGGTGGGTGAACCGGGAAAGATTGTGATCACAATT 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 GAACCGGTGATAACCGATTCTTTTAAGGTGGGTGAACCGGGAAAGATTGTGATCACAATC 1766
Query 1618 GATAACCAGACTTCCAAGAAGAAGAAAGTGCTCTACAGGTTCAAAACTCAACCAA-GGTC 1676
|| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1767 GACAACCAGACTTCCAAGAAGAAGAAAGTGCTCTACAGGTTCAAAACTCAATAAAAGGTC 1826
Query 1677 TGATCTTTGAAATCCAAATCCAAGGAAGAA 1706
||||||||||||||||||||||||||||||
Sbjct 1827 TGATCTTTGAAATCCAAATCCAAGGAAGAA 1856
Score = 586 bits (317), Expect = 2e-166
Identities = 455/516 (88%), Gaps = 31/516 (6%)
Strand=Plus/Plus
Query 2 TTCGAAGATCAGACAAG-AAGATGGCTCAAGAGGAAGTACAGAAATCAGCTGATGTTGCC 60
||| || |||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 78 TTCTAAAATCAGACAAGAAAGATGGCTCAAGAGGAAGTACAGAAATCGGCTGATGTCGCT 137
Query 61 GCTCCTCC---GGTGACGGAGAAACCTATTACCGATAAGGAGGTTACGGTTCCTACCCCT 117
||| |||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 138 GCTGCTCCGGTGGTGAAGGAGAAACCTATTACCGATAAGGAGGTTACTATTCCTACCCCT 197
Query 118 GTGGCTGAGAAGGAGGAAGTGGCTACTCCTGCCTCGGACGAGAAGGCGGTGCCGGAGAAG 177
||||| ||||| |||||||| ||| |||||| ||| || ||||||||||| || ||||||
Sbjct 198 GTGGCAGAGAAAGAGGAAGTTGCTGCTCCTGTCTCTGATGAGAAGGCGGTTCCAGAGAAG 257
Query 178 GA-G-G--T---------G--G-CTC--CGGCGGAAGCGGAGAAATCTGTTCCGGTGAAG 219
|| | | | | | | | ||||||||||||||||||||||| ||||||||
Sbjct 258 GAGGTGACTCCGGAGAAGGAAGCCCCAGCGGCGGAAGCGGAGAAATCTGTTTCGGTGAAG 317
Query 220 GAGGAAGAGACAGTTGTTGTAGCTGAGAAGGTGGTTGTTTTAACGGCTGAGGAAGTTCAG 279
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 318 GAGGAAGAGACGGTTGTTGTAGCTGAGAAGGTTGTTGTTTTAACTGCTGAGGAAGTTCAG 377
Query 280 AAGAAAGCACTTGAGGAGTTTAAGGAGCTTGTGAGGGAGGCTTTGAACAAACGTGAATTC 339
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 378 AAGAAGGCACTTGAGGAGTTTAAGGAGCTTGTAAGGGAGGCTTTGAACAAACGTGAATTC 437
Query 340 ACTGCTCCGGTga--------a-ggaagagaaaccagaggagaagaaaccggaagaggaa 390
||||||||||||| | |||||||||| |||||||||||||| | || ||||||
Sbjct 438 ACTGCTCCGGTGACGCCGGTTAAGGAAGAGAAAACAGAGGAGAAGAAAACAGAGGAGGAA 497
Query 391 actaaagcggaagagaaaacagaggagaagaaagaagagacaacgactgaggttaaggtt 450
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ACTAAAGAGGAAGAGAAAACAGAGGAGAAGAAAGAAGAGACAACGACTGAGGTTAAGGTT 557
Query 451 gaagaagagaaaCCGGCGGTTCCAGCGGCGGAGGAG 486
||||||||||||||||||||||||||||||||||||
Sbjct 558 GAAGAAGAGAAACCGGCGGTTCCAGCGGCGGAGGAG 593
> AT1G22530.1 | Symbols: PATL2 | PATELLIN 2 | chr1:7955493-7958442
REVERSE LENGTH=2448
Length=2448
Score = 867 bits (469), Expect = 0.0
Identities = 845/1025 (82%), Gaps = 31/1025 (3%)
Strand=Plus/Plus
Query 658 GAGCCGGAAGAAGTCTCGATCTGGGGCGTTCCACTACTCCAAGACGAGAGATCTGACGTG 717
||||| ||||||||||| |||||||| | ||||| || | ||||| ||||| ||||||
Sbjct 1155 GAGCCAGAAGAAGTCTCAATCTGGGGAATCCCACTTCTAGAGGACGAAAGATCCGACGTG 1214
Query 718 ATCCT-CACGAAATTCCTCCGTGCAAGAGACTTCAAGGTCAAAGAAGCTTTAACCATGCT 776
||||| | | ||||||||||||||| | |||||||||||||||||||| || || |||||
Sbjct 1215 ATCCTCCTC-AAATTCCTCCGTGCACGTGACTTCAAGGTCAAAGAAGCCTTCACGATGCT 1273
Query 777 TAAAAACACCGTCCAGTGGCGTAAAGAAAACAAAATCGACGAGCTCG--TC-GAAGCCGC 833
|||||||||||||| ||||| ||||| ||||| |||||||| || | || |||| |
Sbjct 1274 GAAAAACACCGTCCAATGGCGCAAAGAGAACAAGATCGACGACCTAGTCTCAGAAG-ATC 1332
Query 834 CGGAGAAGAAGCGAGTGAGTTCGAGAAGATGGTGTTTGCTCACGGTGTTGACAAAGAAGG 893
|| | ||||||||| || |||||| ||||||| |||||||||| |||||| ||||
Sbjct 1333 TTGA-AGGAAGCGAGT---TT-GAGAAGTTGGTGTTCACTCACGGTGTCGACAAACAAGG 1387
Query 894 ACACGTCGTGATCTACAGCTCCTACGGTGAATTCCAGAACAAAGA-ACTTTTCTCCGACA 952
||| ||||||||||| ||||| |||||||| || |||||||| || | ||||||| || |
Sbjct 1388 ACATGTCGTGATCTATAGCTCGTACGGTGAGTTTCAGAACAAGGAGA-TTTTCTCAGATA 1446
Query 953 AGGAGAAGCTTAACAAATTCCTCAACTGGAGGATTCAGCTACAAGAGAAGTGTGTGAGAG 1012
| |||||||||| ||| || ||||| |||||||||||| | ||||||||||||||||| |
Sbjct 1447 AAGAGAAGCTTAGCAAGTTTCTCAAATGGAGGATTCAGTTCCAAGAGAAGTGTGTGAG-G 1505
Query 1013 -CTATTGA-TTTCAGCAACCCCGAAGCGAAATCTTCGTTCGTATTCGTCAGCGACTTCAG 1070
|| |||| ||| || ||| || || || || |||||||| ||||| || ||||||||
Sbjct 1506 TCTCTTGACTTT-AG---CCCTGAGGCTAAGTCATCGTTCGTGTTCGTTAGTGACTTCAG 1561
Query 1071 GAACGCTCCAGGACTCAAG-AAAAGAGCGTTGTGGCAATTCATCAGACGCGCTGTTAAAC 1129
||||||||| ||||| | | ||||| |||||||| ||||| | |||||| ||||| |
Sbjct 1562 GAACGCTCCTGGACT-TGGTCAGAGAGCATTGTGGCAGTTCATTAAACGCGCCGTTAAGC 1620
Query 1130 AATTCGAGGACAATTACCCCGAATTCGCCGCAAAAGAGCTATTCATCAATGTCCCATGGT 1189
||||||| || || || || || || | ||| |||||||| ||||| |||||||||||||
Sbjct 1621 AATTCGAAGATAACTATCCAGAGTTTGTCGCTAAAGAGCTGTTCATTAATGTCCCATGGT 1680
Query 1190 GGTACATTCCTTACTACAAAACATTCGGATCTATCATCACATCGCCAAGGACTAGGAGCA 1249
||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||
Sbjct 1681 GGTACATTCCTTACTACAAAACATTCGGAAGTATCATTACATCGCCAAGGACAAGGAGCA 1740
Query 1250 AGATGGTCCTTGCTGGTCCATCCAAATCTGCCGATACTATTTTCAAATACATAGCTCCTG 1309
||||||||||| |||||||||||||||| || || || |||||||||||| |||||||||
Sbjct 1741 AGATGGTCCTTTCTGGTCCATCCAAATCCGCTGAGACCATTTTCAAATACGTAGCTCCTG 1800
Query 1310 AACAAGTCCCGGTTAAATACGGTGGACTTAGCAAAGATACTCCTTTGACCCAAGAA-ACC 1368
|| |||||||||||| || |||||||| |||||||||| ||| || ||| ||| |
Sbjct 1801 AAGTAGTCCCGGTTAAGTATGGTGGACTCAGCAAAGATAGTCCATTCACCGTTGAAGATG 1860
Query 1369 -A-TAACCGAAGCCATCGTTAAACC-AGCAGCCAACTACACCATTGAATTGCCTGCTTCT 1425
| | ||||| ||| | |||||| | | || | || || |||||||| ||||||||| |
Sbjct 1861 GAGTCACCGAGGCCGTAGTTAAATCGA-CATCTAAATATACCATTGATTTGCCTGCTACA 1919
Query 1426 GAGGCTTGCACACTTTCGTGGGAGCTTAGGGTTTTGGGTGCTGACGTGAGCTACGGAGCT 1485
|||| || ||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1920 GAGGGTTCCACGCTCTCATGGGAGCTTAGGGTTTTGGGTGCGGACGTGAGCTACGGAGCT 1979
Query 1486 CAGTTTGAGCCAACCACTGAGGGAAGCTATGCTGTGATCGTCTCTAA-AACCCGGAAGAT 1544
|| |||||||||| || ||||| |||||| | ||||| |||||||| |||| ||||| |
Sbjct 1980 CAATTTGAGCCAAGCAATGAGGCAAGCTACACCGTGATTGTCTCTAAGAACC-GGAAGGT 2038
Query 1545 TGGGTCAACCGATGAACCGGTGATAACCGATTCTTTTAAGGTGGGTGAACCGGGAAAGAT 1604
|| | ||| |||||||||||||||||||||||||| |||| |||| |||||||| |
Sbjct 2039 CGGTTTAACTGATGAACCGGTGATAACCGATTCTTTCAAGGCAAGTGAGGCGGGAAAGGT 2098
Query 1605 TGTGATCACAATTGATAACCAGAC-TTCCAAGAAGAAGAAAGTGCTCTACAGGTTCAAAA 1663
|||||||| ||||| ||||| || || ||||||||||| ||||||||||||| |||||
Sbjct 2099 CGTGATCACGATTGACAACCAAACCTTT-AAGAAGAAGAAGGTGCTCTACAGGTCCAAAA 2157
Query 1664 CTCAA 1668
| |||
Sbjct 2158 CCCAA 2162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5