BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926580
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72175.1 | Symbols: | RING/U-box protein with domain of unk... 939 0.0
AT1G22510.2 | Symbols: | RING/U-box protein with domain of unk... 436 9e-122
> AT1G72175.1 | Symbols: | RING/U-box protein with domain of unknown
function (DUF 1232) | chr1:27157875-27159558 FORWARD
LENGTH=860
Length=860
Score = 939 bits (508), Expect = 0.0
Identities = 570/600 (95%), Gaps = 4/600 (1%)
Strand=Plus/Plus
Query 1 TAAACGGAAGAAACTAAGAGATGAATAGTCCACCGGAGAACGATCTTTGTTCGATATGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 TAAACGGAAGAAACTAAGAGATGAATAGTCCACCGGAGAACGATCTTTGTTCGATATGTC 143
Query 61 ATTCCCACTTCACCGCTCCATGTCAAGCCAATTGTTCTCATTGGTTCTGCGGAAATTGCA 120
||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 144 ATTCCCACTTCACCGCTCCTTGTCAAGCCAATTGTTCCCATTGGTTCTGCGGGAACTGCA 203
Query 121 TTATGCAGGTGTGGAGGCATGGATCTACATTGCAGCCATGTAAATGCCCTTTGTGTCGTC 180
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 204 TTATGCTGGTGTGGAGGCATGGATCTACATTACAGCCATGTAAATGCCCTTTGTGTCGTC 263
Query 181 GTCCTATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAGAGACCGGAATGACAG-TACA 239
||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 264 GTCATATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAGAGACCGTAATGAC-GCTACA 322
Query 240 GTTGCGGAGGTTCTTGGTAATCTTGAAACGTATAACCGACTCTTTGGCGGGCGTTCAACT 299
||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 323 GTTAAGGAGGTTCTTGGTAATCTTGAAACTTACAACCGACTCTTTGGCGGGCGTTCAAGT 382
Query 300 AGTTTACTTCAGAGGATGCAAGACCTTCCCTTCTTACTACGGAGGTTGTTGCGGGAAATG 359
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 383 AGTTTAGTTCAGAGGATGCAAGACCTGCCCTTCTTACTACGGAGGTTGTTGCGGGAAATG 442
Query 360 ATGGATCCGCAAAGAACGCTTCCACTTGTGATTAGGGCTCGGGTTTATATCGCAATGATT 419
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 443 ATGGATCCACAAAGAACGCTTCCACTTGTCATTAGGGCTCGGGTTTATATCGCAATGATT 502
Query 420 CTGAGTGCTATTTACATAATCAGTCCAATAGATATCATTCCAGAAGGAGTTTTGGGGATA 479
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 503 CTCAGTGCTGTTTACATAATCAGTCCAATAGATATCATTCCAGAAGGAGTTCTGGGGGTA 562
Query 480 GTCGGTTTGCTTGATGATCTACTCATAGCACTGATT-GCTTTCCTCCATGTTGCTGCTTT 538
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 563 GTCGGTTTGCTTGATGATCTACTCATAGCACTGATTTG-TTTCCTCCATGTTGCTGCTCT 621
Query 539 GTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCATGAATCAGTGAATGTCGTTGACA 598
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||
Sbjct 622 GTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCGTGAATCAATGAGTGTCTTTGACA 681
> AT1G22510.2 | Symbols: | RING/U-box protein with domain of unknown
function (DUF 1232) | chr1:7950818-7952832 REVERSE LENGTH=1036
Length=1036
Score = 436 bits (236), Expect = 9e-122
Identities = 400/478 (84%), Gaps = 16/478 (3%)
Strand=Plus/Plus
Query 110 CGGAAATTGCATTATGC-AGGTGTGGAGGCATGGATCTACATTGCAGCCATGTAAATG-C 167
||| || |||||||||| | || |||||||||||||||||||| | |||||| ||||| |
Sbjct 383 CGGGAACTGCATTATGCTA-GTTTGGAGGCATGGATCTACATTACGGCCATGCAAATGTC 441
Query 168 CCTTTGTGTCGTCGTCCTATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAG-AGACCG 226
|| |||||||||||||| || |||||||| |||||||| ||||| ||| | || || ||
Sbjct 442 CC-TTGTGTCGTCGTCCGATAAGTTTGTTAGTTCCTTCTGAGGAAACAGTGAGAAG-TCG 499
Query 227 GAATGACAG-TACAGTTGCGGAGGTTCTTGGTAATCTTGAAACGTATAACCGACTCTTTG 285
|||||| | ||||||| | ||||||||| | || ||||||| || ||||| ||||||
Sbjct 500 GAATGA-TGCTACAGTTTCTGAGGTTCTTCATGATGTTGAAACTTACAACCGTGTCTTTG 558
Query 286 GCGGGC-GTTCAACTAG-TTTACTTCAGAGGATGCAAGACCTTCCCTTCTTACTACGGAG 343
| || | | |||| | | ||| ||||||||||||||||||||||||||||||| || ||
Sbjct 559 GTGGACAG-TCAAGTGGCCTTA-TTCAGAGGATGCAAGACCTTCCCTTCTTACTCCGAAG 616
Query 344 GTTGTTGCGGGAAATGATGGATCCGCAAAGAACGCTTCCACTTGTGATTAGGGCTCGGGT 403
||||||||| |||||||||||||| ||||||||||||||||| || || || ||||| ||
Sbjct 617 GTTGTTGCGAGAAATGATGGATCCACAAAGAACGCTTCCACTCGTCATCAGAGCTCGTGT 676
Query 404 TTATATCGCAATGATTCTGAGTGCTATTTACATAATCAGTCCAATAGATATCATTCCAGA 463
|||||| || |||| || ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 677 TTATATTGCGTTGATACTCAGTGCGATTTACATAATCAGCCCAATAGATATCATTCCGGA 736
Query 464 AGGAGTTTTGGGGAT-AGTCGGTTTGCTTGATGATCTACTCATAGCACTGATT-GCTTTC 521
|||||| |||||| | | ||||||| || |||||||| |||||||| |||||| | ||||
Sbjct 737 AGGAGTCTTGGGGGTTA-TCGGTTTACTAGATGATCTTCTCATAGCCCTGATTTG-TTTC 794
Query 522 CTCCATGTTGCTGCTTTGTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCATGAA 579
|||||||| |||||| | ||||| || |||||||||| |||||||| ||||| ||||
Sbjct 795 CTCCATGTCGCTGCTCTCTACCGATCCGTTCTCTATTCCCGTCATGGTGGTTCGTGAA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5