BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926585
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72220.1 | Symbols: | RING/U-box superfamily protein | chr1... 1598 0.0
> AT1G72220.1 | Symbols: | RING/U-box superfamily protein | chr1:27184281-27185830
REVERSE LENGTH=1550
Length=1550
Score = 1598 bits (865), Expect = 0.0
Identities = 1184/1329 (89%), Gaps = 57/1329 (4%)
Strand=Plus/Plus
Query 1 TGTTTTGATTGTTTTCTTTAATGGCGAAGAAGAAGCATCGCAAGCTCTTCCCTACCTTAG 60
|||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 182 TGTTTTGAGTGTTCTCTTTAATGGCGAGGAAGAAGCATCGAAAGCTCTTCCCTACCTTAG 241
Query 61 CATCAGAGACAAACAAAACGTTAGACTGCTCGAACGGAGTCTGCGACCCGATTTGCCCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CATCAGAGACAAACAAAACGTTAGACTGCTCGAACGGAGTCTGCGACCCGATTTGCCCTT 301
Query 121 ACAATTGCTATCCAGAACCCGATTACTCCGCCATATCACCACAGCTCCCTCCATGGTCAT 180
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 302 ACAATTGCTATCCAGAACCCGATTACTACACCATATCACCACAGCTACCTCCATGGTCAT 361
Query 181 CGTCACCAGCT-CCATCTCCATCTCCATCTCCATCAATCTCAGCCGTTTACCAACCATCT 239
|||||||| | |||||||||| |||||||||||| |||||||||||||| | |||||||
Sbjct 362 CGTCACCA-CAACCATCTCCATGTCCATCTCCATCTATCTCAGCCGTTTATCTACCATCT 420
Query 240 CAAAACTCATCATCTTCCTTGGACGCCATAAGCATCATCACCATAACCGGTGCGGTCTTA 299
||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 421 CAAGACTCTTCATCTTCCTTAGACGCCATATCCATCATCACCATAACCGGTGCGGTCTTA 480
Query 300 GCCATCCTTTTAACCGGATTCTTTCTTGTAGCGAAATTCGTTTCAGACAGCGTAAACCGT 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 GCCATCCTTTTAACCGGATTCTTTCTTGTAGCGAAATTCTTTTCAGACAGCGTAAACCGT 540
Query 360 GACAACCACGGAAGATATCAGTCCGATAACGAAGACAACGACACGGTAATGGGAG-AAGA 418
| |||||| |||| |||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 541 GTCAACCAAGGAACATATCAATCCGATAACGAAGACAACGACACGGTAATGG-AGGAAGA 599
Query 419 GTTTCAAGATAGGGAACAAGTGGATCACCCAATATGGTTAATCAGAACAACAGGTCTACA 478
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 GTTTCAAGATAGGGAACAAGTGGATCACCCAATATGGTTAATAAGAACAACAGGTCTACA 659
Query 479 ACAATCGATCATAAACTCGATTACGATCTGTAATTACAAGAGAGGAGATGGTTTAATCGA 538
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 ACAATCGATCATTAACTCGATTACAATCTGTAATTACAAGAGAGGAGATGGTTTAATCGA 719
Query 539 GAGAACAGATTGTCCTGTTTGTTTAAACGAGTTTGAAGAAGATGAGAGTCTTAGGTTATT 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGAACAGATTGTCCAGTTTGTTTAAACGAGTTTGAAGAAGATGAGAGTCTTAGGTTATT 779
Query 599 GCCTAAATGTAACCACGCTTTTCACATCTCTTGTATTGATACTTGGCTTAGTTCTCACAC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCCTAAATGTAACCACGCTTTTCACATCTCTTGTATTGATACTTGGCTTAGTTCTCACAC 839
Query 659 CAGTTGTCCTCTGTGTCGTGCTGGTATTGCGATGATCAGTGTTACCACTCCACGGTGTTC 718
|| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||
Sbjct 840 CAATTGTCCTCTGTGTCGTGCTGGTATTGCGATGATTAGTGTCACCACTCCACGGTATTC 899
Query 719 CGGTCCGGTCGATGTAACTCCGGGAGGA-CTAGGCTCACATTTGGAAAACGATGGAGTTG 777
|||||||| || |||||||| |||||| | ||| ||||||||||| |||||||||||||
Sbjct 900 TGGTCCGGTTGAAGTAACTCCCGGAGGATC-AGGTTCACATTTGGAGAACGATGGAGTTG 958
Query 778 GTGAAGAAGGTCAAG-ATCATCTTGGGAGAGAGAGGGATGAATCTGATTTCAAAGAGAGG 836
|||||||| ||| | | | ||| | | |||| ||| |||||||| ||||||||
Sbjct 959 ATGAAGAAGATCATGGAG-AGATTGAAA-ACAGAGT--TGATTCTGATTTTAAAGAGAGT 1014
Query 837 GATGATTCAGACAACAGAGACCTGAATTCAGATGTAAGAATTGAGATTAATCGGGGTTTG 896
||||||||||||| | ||| | || |||| || | ||||| | | ||
Sbjct 1015 GATGATTCAGACAT-A-AGA----A-TTGAGATTTA----T--AGATT--T-GA--TTC- 1055
Query 897 GAGGAAATCGACGGTGATGGATCTGAAACAGAGAAGAAAGAGAAAGTTAGGGTTTTTAGA 956
|| | || | |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 1056 -AG-A---CG--G-TGATGGATCTGAAACAGAGACGAAAGAGAGAGTTAGGGTTTTGA-A 1106
Query 957 G-AGTGTATGGATTCAAATGAAGCAGATTCGATTAAT-TCTCTCTCGCATATGAAAACCC 1014
| ||||||||||| |||||| || |||||| | ||| ||||||||||||| ||||||||
Sbjct 1107 GGAGTGTATGGATCCAAATGGAGGAGATTC-AGTAAACTCTCTCTCGCATACGAAAACCC 1165
Query 1015 ATAAAGAAAGTGTCGATTTTCCGGGAAAATCATGCGAGAATCAGAGTCAGGAATTCACCA 1074
|| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 1166 ATGTAGAAAGTGTAGATTTTCCGGGGAAATCATGCGAGAATCAGAGTGAGGAATTCACTA 1225
Query 1075 GACCCAACGGAGAAGACGAAGCAAGCTGCTCTGAGGAAAACGGTGGT--CACGTCGACCA 1132
||| ||||||||||| |||||||||||||||||||||||||||||| || | | ||||
Sbjct 1226 GACATAACGGAGAAGATGAAGCAAGCTGCTCTGAGGAAAACGGTGGTGGCA-G-CAACCA 1283
Query 1133 ATTACGGAGAAGTTGTGATTCCATTGATTCTGGTGAATTGAACGGCGAAAGAACCGAAGA 1192
||||||||||||||||||||| | | | ||||||||||||||||| ||||| |||
Sbjct 1284 ATTACGGAGAAGTTGTGATTC--T-G-----G-TGAATTGAACGGCGAAACAACCGGAGA 1334
Query 1193 A-ACAGAGAAAAGCCAGTCAGACATTTCATCGAGCACGTTGAAGACAAATGGAAGCTCCT 1251
| || |||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1335 TGA-AGGGAAAAGTCAGTCAGACATTTCGTCGAGTACGTTGAAGACAAATGGAAGCTCCT 1393
Query 1252 CCTCAGTATCATGTTTGTACAAAAACAAGAGTTCGATTTTTCCGCTGTAGTAAAAAGTCT 1311
|||| || |||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1394 CCTCTGTTTCATGTTTCAACAAAAACAAGAGTTCGGTTTTTCCGCTGTAGTAAAGCGTCT 1453
Query 1312 CTACCAAAA 1320
|||| ||||
Sbjct 1454 CTACGAAAA 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5