BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926587

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72240.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   606    4e-173


> AT1G72240.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G22470.1); 
Has 65 Blast hits to 63 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 64; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27190179-27190749 
FORWARD LENGTH=571
Length=571

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 382/407 (94%), Gaps = 8/407 (2%)
 Strand=Plus/Plus

Query  1    ACagaagaacaagaagaacaatgaaatcaaagaaagctgaagaa---aagagaTCAGATT  57
            ||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||
Sbjct  13   ACAGAAGAACAAGAAGAACAATGAAATCAAAGAAAGCTGAAGAAGGGAAGAGATCGGATT  72

Query  58   CAAATTCTGATTCAGACAATAACTTCTCATGCAAGAAGCACACGAAACATAGACAGTCTC  117
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   CAAATTCTAATTCAGACAATAACTTCTCATGCAAGAAGCACACGAAACATAGACAGTCTC  132

Query  118  CTGGAATCTGTTCCCTCTGTCTCACCGAGAGGCTCTCTAAGCTGTCTCTGGAGTACTACG  177
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  133  CTGGAATCTGTTCTCTCTGTCTCACCGAGAGGCTCTCTAAGCTATCTCTGGAGTACTACG  192

Query  178  ACTACACTAAGAAGGCAGCTGAAACGGCGACGTATTGCGGCTCGTCATCAACAtcttctt  237
            | |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||
Sbjct  193  ATTACACTAAGAAGGCAGTTGAAACGGCGACGTATTGCGGCTCAACATCAACATCTTCTT  252

Query  238  cctcgtcggtctcgtcttgcgactcttcttcttcggtctcttcttgttcatctccttTGC  297
            |||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||
Sbjct  253  CCTCGTCGGTCTCGTCTTGTTACTCTTCTTCTTCTGTCTCTTCTTGTTCGTCTCCTTTGC  312

Query  298  AATATCGGTATAGAGATCAGAAGAAGAAAGATGGGAAGAAACAAAGCTTTTTATTCAGAT  357
            ||||||||||||||||  | |||||||| |||||||||||||||||||| || |||||||
Sbjct  313  AATATCGGTATAGAGA--A-AAGAAGAAGGATGGGAAGAAACAAAGCTTCTTGTTCAGAT  369

Query  358  TATTGCTCGGATCCATCGTAGATTAGTTCTTTTATTTCAC-TAGTTT  403
            |||||||||||||||||||||| |||||||||| |||| | ||||||
Sbjct  370  TATTGCTCGGATCCATCGTAGACTAGTTCTTTTCTTTC-CGTAGTTT  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5