BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926590

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15410.1 | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide...   152    2e-36


> AT5G15410.1 | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide-regulated 
ion channel family protein | chr5:5003307-5006882 
REVERSE LENGTH=2453
Length=2453

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 105/116 (91%), Gaps = 1/116 (1%)
 Strand=Plus/Plus

Query  44   TGGTCACATGTAGCTTCAATTTAGATTGGCTTACGTCTCCCGAGATTCGCTTGTCGTTGG  103
            ||| ||| ||| ||||||||| ||| |||| ||||||||  |||| ||||||||||||||
Sbjct  657  TGG-CACGTGTGGCTTCAATTCAGACTGGCCTACGTCTCGAGAGAGTCGCTTGTCGTTGG  715

Query  104  TTGTGGCAAGCTCGTTTGGGATCCACACGCCATCGCGTCTCACTACGCACGCTCTC  159
            |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  716  TTGTGGGAAGCTCGTTTGGGATCCACGCGCCATCGCGTCTCACTACGCACGCTCTC  771



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5