BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926593
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72290.1 | Symbols: | Kunitz family trypsin and protease in... 279 1e-74
> AT1G72290.1 | Symbols: | Kunitz family trypsin and protease
inhibitor protein | chr1:27215789-27216791 FORWARD LENGTH=1003
Length=1003
Score = 279 bits (151), Expect = 1e-74
Identities = 413/533 (77%), Gaps = 43/533 (8%)
Strand=Plus/Plus
Query 2 AAAACACA-A-AACAATCAC-AATGAAGAAACCTTCAGTGGTCTCTTTTCTCATCACTCT 58
|||||||| | ||||||||| ||||||||| ||||||||| ||||||||||||||| |||
Sbjct 42 AAAACACACATAACAATCACAAATGAAGAATCCTTCAGTGATCTCTTTTCTCATCATTCT 101
Query 59 CCTGTTGGCTGCAGCTGTCTGCATCCACGGAGGCGAACCGGTGAAGGACATTGTCGGAAA 118
|||||| |||||| || | |||| ||||||| |||||||||||||| | | ||||||
Sbjct 102 CCTGTTTGCTGCAACTATTTGCACCCACGGAAATGAACCGGTGAAGGATACAGCCGGAAA 161
Query 119 T-TATCTTAA-ACTCGGTGAACAATACTTCATCCAGCCGGTAAATACC----G-----AC 167
| | ||||| || | | ||||||||||||||||||||||| || ||| | ||
Sbjct 162 TCCA-CTTAACAC-CCGCGAACAATACTTCATCCAGCCGGTTAAGACCGAGAGTAAAAAC 219
Query 168 GGAGGTGGTCTTGTCCCAGcccccccTACAATA-TTTCCTCTTTGCCCACTTGGCATCGT 226
||||||||||||||||||||| || |||| || || ||| |||| ||||||||||||
Sbjct 220 GGAGGTGGTCTTGTCCCAGCCGCCATTACAGTACTTCCCT-TTTGTCCACTTGGCATCAC 278
Query 227 CCAAACTCTCCATCCGTATCAACCTGGCGTACCGCCGGTTAGCTT-TTCAAT-GCCA-TA 283
|||||| || | ||| || ||||| ||| || ||||||||||| | | | | || |
Sbjct 279 CCAAACACTTCTTCCCTACCAACCCGGCCTA---CCGGTTAGCTTCGT-ATTAG-CACTT 333
Query 284 CGCGAACATGGAAACTACTGTTTCT-ACAGATGATTATGTAAACATCGAGTTCAAGTCCA 342
||| | || | | || | || | ||| | |||||||||||||||||||||||
Sbjct 334 GGCG--TA-GG-ATCAACCG-TTATGACATCTTCGGCTGTAAACATCGAGTTCAAGTCCA 388
Query 343 ACATCTGGGCC----TGCAATGAGTTTTCCAAGTTTTGGAAAGTCGATGAAACCTCATCG 398
|||||| |||| ||||| |||||||||||||||||| |||| ||||| |||||||
Sbjct 389 ACATCT-GGCCGTTTTGCAAGGAGTTTTCCAAGTTTTGGGAAGTTGATGATTCCTCATCA 447
Query 399 GCTAGCGAGGAGCCTCTCA-TTCTCGTTGGTGGTACACCGCAGGAACC-AAATAGTTGGT 456
||| | |||||||| ||| ||||| | ||||||| | | ||| || |||||| | ||
Sbjct 448 GCTCCCAAGGAGCCT-TCAATTCTCATCGGTGGTAAAATGGGGGA-CCGAAATAGCTCGT 505
Query 457 TTAAGGTTGACATTGCCGGAGAAGGAGCGGGAGCAAACAGTT-ACAAGTTGAC 508
||||| |||| | || ||||||||||| |||||||| ||| | ||||||||
Sbjct 506 TTAAGATTGAGAAAGCTGGAGAAGGAGCTAGAGCAAAC-GTTTATAAGTTGAC 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26674332057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5