BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926600
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72350.1 | Symbols: | MADS-box transcription factor family ... 965 0.0
> AT1G72350.1 | Symbols: | MADS-box transcription factor family
protein | chr1:27239273-27239947 REVERSE LENGTH=675
Length=675
Score = 965 bits (522), Expect = 0.0
Identities = 618/665 (93%), Gaps = 4/665 (1%)
Strand=Plus/Plus
Query 40 GAAGCTTCAACAATCACTTGCTTACCGACCAC-GAAACAAAACCCCCTTCAAAACCCTAA 98
||||||||||||||||||| |||||| ||||| ||| ||||| ||||| |||||||||||
Sbjct 13 GAAGCTTCAACAATCACTTTCTTACCAACCACGGAACCAAAA-CCCCTACAAAACCCTAA 71
Query 99 CTTGCTGGTCAACCCaaaaaaaGAGACTAAACTAAAAACCCCTAAAACCACCAAAGGTCG 158
|||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 72 CTTGCTGGCCAAACCAAAAAAAGAGACTAAACAAAAAAAACCTAAAACCACCAAAGGTCG 131
Query 159 ACAGAAGATAGAGATCAAGAAGATCATTCTGGAAAACCGAAGGCAAGTGACGTTTTCCAA 218
||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||
Sbjct 132 ACAGAAGATAGAGATCAAGGAGATCATGCTGGAGACCCGAAGGCAAGTGACGTTTTCCAA 191
Query 219 ACGCCGATTCGGGCTTTTCAAAAAAGCGGCGGAGCTAAGCGTTCTCTGCGGCGCACAAAT 278
||| |||| ||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 192 ACGACGATCCGGGCTTTTCAAAAAAGCGGCAGAATTAAGCGTTCTCTGCGGCGCACAGAT 251
Query 279 TGGTATCATAACGTTTTCACGAGT-AGATAGGATCTACTCGTTTGGTAACGTGGACTCAC 337
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct 252 TGGTATCATAACGTTTTCACG-TTGCGATAGGATCTACTCGTTTGGTAACGTGAACTCAC 310
Query 338 TCATCGATAAATACTTGCGTAAGACTCCGGTGATGCTGAGGTCACATCCTGGAGGTAACG 397
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 311 TCATCGATAAATACTTGCGTAAGGCTCCGGTGATGCTGAGGTCACATCCCGGTGGTAACG 370
Query 398 TGGCAAACGGAGAGGAAGATAACGACGGTTTGATGTGGTGGGAGAGGGCGGTGGAGAGTG 457
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 371 TGGCAAACGGAGAGGAAGATAACGACGGTTTGATGTGGTGGGAGAGAGCGGTGGAGAGTG 430
Query 458 TTCCGGAGGAGGATATTGAAGAGTACAAGAAGGCGTTGAGTGTGTTAAGGGAGAATTTAT 517
| ||||||||| |||| |||||||||||||| || ||||||||||||||||||||||| |
Sbjct 431 TGCCGGAGGAGCATATGGAAGAGTACAAGAATGCCTTGAGTGTGTTAAGGGAGAATTTGT 490
Query 518 TGACGAGGATTTATCAGATGAGTGGTGATCGGACGGTCGAGAATCTGCCGGCATTTCCAA 577
|||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 491 TGACGAGGATCTACCAGATGAGTGGTGATCGGACGGTTGAGAATCTTCCGGCATTTCCAA 550
Query 578 ATGAGATGGCTATGGCTGACTGGAAATTGACTAATGAAAATCTGATGGCTAGGAACGATC 637
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 551 ATGAGATGGCTATGGCTGACTGGAAATTAACGAATGAAAATCTGATGGCTAGGAACGATC 610
Query 638 GAGGTTACGCAGGTAACGGTGGTGATTTGGAGTTTGCGTTTATGTCTCAAAACGGTAGAC 697
||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 611 GAGGTTATGGAGGTAACAATGGTGATTTGGAGTTTGCGTTTATGCCTCAAAACGGTAGAC 670
Query 698 AGTGA 702
|||||
Sbjct 671 AGTGA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5