BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926601

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72360.2 | Symbols: HRE1 | Integrase-type DNA-binding superf...   486    1e-136


> AT1G72360.2 | Symbols: HRE1 | Integrase-type DNA-binding superfamily 
protein | chr1:27241812-27242827 FORWARD LENGTH=931
Length=931

 Score =  486 bits (263),  Expect = 1e-136
 Identities = 338/373 (91%), Gaps = 10/373 (3%)
 Strand=Plus/Plus

Query  234  GCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCTAAAGCT  293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  414  GCTGAAGAAGCTGCAAGAGCTTATGATCTTGAAGCTAAGAGAATCCGTGGAGCCAAAGCT  473

Query  294  AAGCTCAATTTCCCTAACGAATCCTCTAGAAAGCGAAAAGCCGAGACGCCTAAGACTGTG  353
            ||||||||||||||||||||||||||| ||||| | |||||| ||  || ||||||||||
Sbjct  474  AAGCTCAATTTCCCTAACGAATCCTCTGGAAAGAGGAAAGCCAAG--GC-TAAGACTGTG  530

Query  354  CAACAGATTGAGGAGAAGCATGAGGCTGATCTTGGAT-TGGCGGTGGCTA-GCTCAATGC  411
            |||||| | |||||||| |||||||||||||||| || ||||||||| || |||||  ||
Sbjct  531  CAACAGGTAGAGGAGAATCATGAGGCTGATCTTG-ATGTGGCGGTGG-TAAGCTCAGCGC  588

Query  412  CTAGTAGTAGCTGTCTTGATTTCTTGTGGGAAGAGAATAATCCGGACACGCTTCTGATCG  471
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  589  CTAGTAGTAGCTGTCTTGATTTCTTGTGGGAGGAGAATAATCCGGACACGCTTCTGATTG  648

Query  472  ATACACAATGGCTCGAAGATGTCATCATGGGCGATGCCAAGAAGAAACATGAACGTAATG  531
            |||||||||||||||||||| |||||||||||||||| || ||||||||||||| |||||
Sbjct  649  ATACACAATGGCTCGAAGATATCATCATGGGCGATGCGAATAAGAAACATGAACCTAATG  708

Query  532  ATAGTGAAGAAGCCAAC---GTTAATGCTGCTCCGCTTTCGGAAGAGCTACTAGGTTTTG  588
            |||||||||||||||||   ||| ||||| ||| |||||| |||||||| || | |||||
Sbjct  709  ATAGTGAAGAAGCCAACAACGTTGATGCTTCTCTGCTTTCTGAAGAGCTTCTTGCTTTTG  768

Query  589  AAAACAAGACCGA  601
            | ||| |||||||
Sbjct  769  AGAACCAGACCGA  781



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37524907809


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5