BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926602
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72370.1 | Symbols: P40, AP40, RP40, RPSAA | 40s ribosomal p... 1520 0.0
AT3G04770.1 | Symbols: RPSAb | 40s ribosomal protein SA B | chr... 584 5e-166
> AT1G72370.1 | Symbols: P40, AP40, RP40, RPSAA | 40s ribosomal
protein SA | chr1:27242943-27244931 REVERSE LENGTH=1191
Length=1191
Score = 1520 bits (823), Expect = 0.0
Identities = 905/944 (96%), Gaps = 7/944 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAGAAGAGAGATAACAAAATGGCGACTAATGGATCTGCTAGCTCAGCGCAGCTCC 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 67 AGAAGAAGAAGAGAGATAAGAAAATGGCGACTAATGGATCTGCTAGCTCAGCGCAGCTCT 126
Query 61 CTCAGAAGGAAGCTGACATCAGGATGATGTGTGCTGCTGAGGTTCATCTTGGAACCAAGA 120
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 127 CTCAGAAGGAAGCTGATGTCAGGATGATGTGTGCCGCTGAGGTTCATCTTGGAACCAAGA 186
Query 121 ATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGGTATTTACATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ATTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGGTATTTACATCT 246
Query 181 TCAACCTTGGCAAAACATGGGATAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTG 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 247 TCAACCTTGGCAAAACATGGGAAAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTG 306
Query 241 AGAACCCACAGGACATCATTGTTCAGTCTGCTAGGCCCTATGGACAGAGAGCTGTGTTGA 300
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 307 AGAACCCACAGGACATCATCGTCCAGTCAGCTAGGCCCTATGGACAGAGAGCTGTGTTGA 366
Query 301 AGTTTGCTCAGTACACTGGAGCCAATGCCATTGCTGGAAGGCACACTCCTGGTACCTTCA 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 367 AGTTTGCTCAGTACACTGGAGCCAATGCCATTGCTGGAAGACACACTCCTGGTACCTTCA 426
Query 361 CCAATCAGATGCAGACATCCTTCAGTGAACCTAGGCTGCTGATTCTTACTGACCCAAGAA 420
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 427 CCAATCAGATGCAGACATCCTTCAGTGAACCAAGGCTGTTGATTCTTACTGACCCAAGAA 486
Query 421 CTGACCACCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAATCATTGCTTTCTGTG 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CTGACCACCAGCCTATCAAGGAAGGTGCTTTGGGAAACATTCCAATCATTGCTTTCTGTG 546
Query 481 ACACTGACTCTCCAATGAGATTTGTTGACATTGGTATCCCTGCCAACAACAAGGGAAAGC 540
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 547 ACACAGACTCTCCAATGAGATTTGTTGACATTGGTATCCCAGCCAACAACAAGGGAAAGC 606
Query 541 ACAGCATTGGGTGTCTTTTCTGGCTTCTTGCTCGCATGGTCCTTCAGATGCGTGGAACCA 600
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 607 ACAGCATTGGGTGCCTTTTCTGGCTTCTGGCTCGCATGGTCCTTCAGATGCGTGGAACCA 666
Query 601 TTGGTGCTGCACAGAAGTGGGATGTCATGGTTGATCTGTTCTTTTACAGGGAGCCTGAGG 660
||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 667 TTGCTGCTGGACAGAAGTGGGATGTCATGGTTGACCTGTTCTTTTACAGGGAACCTGAGG 726
Query 661 AGACTAAGCCAGAGGATGAAGATGAAGCTGCCCCTCAGGCAGAATATGG---ACTTCCTG 717
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 727 AGACTAAGCCAGAGGATGAAGATGAAGCTGGCCCTCAGGCAGAATATGGTGCACTTCCTG 786
Query 718 CTCCGGAATATGGAATGGTTGGTGGAGACCAATGGACCACCGCTCAGATCCCTGATGCTG 777
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CTCCAGAATATGGAATGGTAGGTGGAGACCAATGGACCACCGCTCAGATCCCTGATGCTG 846
Query 778 CATGGCCAGGAGA-GGCTCAGGCTCCAATCTCTGCTGCACCTGCTGCTACTTCTTGGAGT 836
||||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 847 CATGGCCAGGAGAAGG-TCAGGCACCAATCTCTGCTGCACCTGCTGCTGCTTCTTGGAGT 905
Query 837 GACTCCGCTGCTGCACCAGCAGATGGTGGATGGGACA-CTGCCGTGCCACCCCCAGGTGC 895
|| |||||||||||||| ||||||||||||||||| | |||||| ||||||| |||| ||
Sbjct 906 GATTCCGCTGCTGCACCGGCAGATGGTGGATGGGA-AGCTGCCGCGCCACCCTCAGGGGC 964
Query 896 TCCAGCTGCTGGTTGGGAGTAAAGTTGATAGCCTTTACTCAATG 939
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 ACCAGCTGCTGGTTGGGAGTAAAGTTGATAGCCTTTACTCAATG 1008
> AT3G04770.1 | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309294-1310887
REVERSE LENGTH=1211
Length=1211
Score = 584 bits (316), Expect = 5e-166
Identities = 491/575 (85%), Gaps = 14/575 (2%)
Strand=Plus/Plus
Query 64 AGAAGGAAGCTGACAT-CAGGATGATG-TGTGCTGCTGAGGTTCATCTTGGAACCAAGAA 121
|||| |||||||| || || ||||||| | | | || || ||||| ||||| ||||| ||
Sbjct 85 AGAAAGAAGCTGATATCCA-GATGATGTTAT-CAGCCGATGTTCACCTTGGTACCAAAAA 142
Query 122 TTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGGTATTTACATCTT 181
||||| || |||||||||||||| |||||||| |||||| |||| ||||||||||| |
Sbjct 143 CTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGACGACGGTATTTACATAAT 202
Query 182 CAACCTTGGCAAA-ACATGGGATAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTG 240
||| ||||| ||| |||||||| ||||| |||||||||||||| |||||||| || || |
Sbjct 203 CAATCTTGG-AAAGACATGGGACAAGCTTCAGATGGCTGCTAGGGTTATTGTAGCAATCG 261
Query 241 AGAACCCACAGGACATCATTGTTCAGTCTGCTAGGCCCTATGGACAGAGAGCTGTGTTGA 300
| |||||| | ||||| |||||||| || || ||||| |||||||| |||||||| ||||
Sbjct 262 AAAACCCAAAAGACATAATTGTTCAATCAGCCAGGCCTTATGGACAAAGAGCTGTCTTGA 321
Query 301 AGTTTGCTCAGTACACTGGAGCCAATGCCATTGCTGGAAGGCACACTCCTGGTACCTTCA 360
||||||||||||||||||| | ||||| ||||||||||| |||||||||||||| ||||
Sbjct 322 AGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGAAGACACACTCCTGGTACTTTCA 381
Query 361 CCAATCAGATGCAGACATCCTTCAGTGAACCTAGGCTGCTGATTCTTACTGACCCAAGAA 420
| || || |||||||| || |||||||| |||||| || ||||||| || ||||||||||
Sbjct 382 CTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAA 441
Query 421 CTGACCACCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAA-TCATTGCTTTCTGT 479
| ||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 442 CCGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAACT-ATTGCCTTCTGT 500
Query 480 GACACTGACTCTCCAATGAGATTTGTTGACATTGGTATCCCTGCCAACAACAAGGGAAAG 539
||||| || ||||||||| ||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 501 GACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCTAACAACAAGGGAAAA 560
Query 540 CACAGCATTGGGTGTCTT-TTCTGGCTTCTTG-CTCGCATGGTCCTTCAGATGCGTGGAA 597
||||||||||| || ||| ||||||||| ||| |||| ||||| || || ||||||||||
Sbjct 561 CACAGCATTGGTTG-CTTGTTCTGGCTT-TTGGCTCGTATGGTTCTCCAAATGCGTGGAA 618
Query 598 CCATTGGT-GCTGCACAGAAGTGGGATGTCATGGT 631
||||| | || || ||||| ||||||||||||||
Sbjct 619 CCATTC-TCGCAGCTCAGAAATGGGATGTCATGGT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5