BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926606
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72420.1 | Symbols: | NADH:ubiquinone oxidoreductase interm... 1171 0.0
AT1G17350.2 | Symbols: | NADH:ubiquinone oxidoreductase interm... 547 5e-155
> AT1G72420.1 | Symbols: | NADH:ubiquinone oxidoreductase intermediate-associated
protein 30 | chr1:27261194-27263669 REVERSE
LENGTH=900
Length=900
Score = 1171 bits (634), Expect = 0.0
Identities = 695/725 (96%), Gaps = 2/725 (0%)
Strand=Plus/Plus
Query 6 CAGCAACTT-ACAACTATGTCACGCTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAAC 64
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 25 CAGCAACTTCAGAACTATGTCACGGTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAAC 84
Query 65 AAAGAAGGCTCTTACGTGGGAACTCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATT 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 AAAGAAGGCTCTAACGTGGGAACTCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATT 144
Query 125 CAAGTTCAATTCAAAAGAAGATCTCAAAACATGGCACCTGTACTCTGATTCTGAATATGG 184
||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||
Sbjct 145 CAAGTTCAATTCAAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGG 204
Query 185 AGGATTATCTTCGGCTTCATTGGAAATTAAAGATGGAGGAAATGGATCAGATTGTATTGG 244
|||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||
Sbjct 205 AGGATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATGG 264
Query 245 TGTTTTCTCTGGGAACCTCTCTACGGATATGAGCGAAGGTTCAAAATGGAATATCAATCG 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 265 TGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCG 324
Query 305 TAGTGGTTTCTGTGGAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GAGTGGTTTCTGTGGAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTA 384
Query 365 TGATTCCATAGCCCTGAGGCTCAGAGGAGATGGAAGGTGCTATATCTCTACTATATATAC 424
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 385 TGATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTATATATAC 444
Query 425 CGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGATAACTCATGGCAAGCTTTTGTTTT 484
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 445 TGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCATGGCAGGCTTTTGTTTT 504
Query 485 TGCTCCAAAGGGAAACTGGTATACAGCTAAGGTTCCTCTTACTCGCTACTTACCAACATG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TGCTCCAAAGGGAAACTGGTATACAGCTAAGGTTCCTCTTACTCGCTACTTACCAACATG 564
Query 545 GAAAGGAAATGTGATAGATGCAGAAATGGAGATGAATCCAGGTCGTGTTGTTGGTATGTC 604
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 565 GAAAGGAAACGTGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTC 624
Query 605 TCTATCTGTTAATGCACAAGGAGGTGGTTTCATTGGAGCTAAATCAGGCGCAGGTGATTT 664
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 625 TCTATCCGTTAACGCACAAGGAGGTGGTTTCATTGGAGCTAAATCAGGCGCAGGCGATTT 684
Query 665 CCTAGTCGAAATCGACTGGGTCAAAGCAGTGAGAATGCCATGAATGATGATGAAAAA-GC 723
|| ||||||||| |||||| ||||||||||||| |||||||||| |||||||||||| ||
Sbjct 685 CCAAGTCGAAATTGACTGGATCAAAGCAGTGAGGATGCCATGAACGATGATGAAAAAAGC 744
Query 724 TTTCT 728
|||||
Sbjct 745 TTTCT 749
> AT1G17350.2 | Symbols: | NADH:ubiquinone oxidoreductase intermediate-associated
protein 30 | chr1:5941784-5944463 FORWARD
LENGTH=917
Length=917
Score = 547 bits (296), Expect = 5e-155
Identities = 555/675 (82%), Gaps = 37/675 (5%)
Strand=Plus/Plus
Query 21 ATGTCACGCTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAACAAAGAAGGCTCTTACG 80
|||||| | ||| |||| |||| ||||||||| || ||||| |||||||||||||||||
Sbjct 74 ATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCGACAAAGAAGGCTCTTACA 133
Query 81 TGGGAAC-TCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATTCAAGTTCAATTCAAA 139
| ||||| | ||||||||||| || |||| ||||||| |||||| |||||| | || ||
Sbjct 134 T-GGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCTAA 192
Query 140 AGAAGATCTCAAA-ACATGGCACCTGTACTCTGATTCTGAATATGGAGGATTATCTTCGG 198
|||||| || ||| | |||||| || || || || |||||||||||||||||||||||||
Sbjct 193 AGAAGA-CTTAAAGAAATGGCATCTCTATTCCGACTCTGAATATGGAGGATTATCTTCGG 251
Query 199 CTTCATTGGAAATTAAAGATGGAGGAAATGGATCAGATTGTATTGGTGTTTTCTCTGGGA 258
|||| ||||| || |||| |||| ||||||||||||| | ||| ||||| || ||||
Sbjct 252 CTTCCTTGGAGATCCCAGATAAAGGAGATGGATCAGATTGCACTGGAGTTTTTTCGGGGA 311
Query 259 ACCTCTCTACGGATATGAGCGAAGGTTCAAAATGGAATATCAATCGTAGTGGTTTCTGTG 318
|||| ||| || | |||||||| ||||||||||| |||| ||| |||||||||||||
Sbjct 312 ACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTG 371
Query 319 GAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCC 378
||||||| ||||| |||||||||||||| ||||||||||| ||||||||| | |||||||
Sbjct 372 GAATGCGCTCAAAAAAGTTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCC 431
Query 379 TGAGGCTCAGAGGAGATGGAAGGTGCTATATCTCTACTATATATACCGAGAACTGGGTGA 438
||||| |||||||||||||||| || |||||||||||||| || ||||| ||||||||||
Sbjct 432 TGAGGATCAGAGGAGATGGAAGATGTTATATCTCTACTATCTACACCGAAAACTGGGTGA 491
Query 439 ACTCGCCAGGACAAG-CAGAAGATAACTCATGGCAAGCTTTTGTTTTTGCTCCAAAGGGA 497
|||| || ||||| | ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 492 ACTCACCGGGACA-GTCAGAAGATAACTCGTGGCAAGCTTTTGTTTTTGCTCCAAAGG-A 549
Query 498 AACT-GGTATACAGCTAAGG----T--T-C--CT-CT-TA------C-TC--GCT--A-- 532
| | ||||||| ||||||| | | | || || || | || ||| |
Sbjct 550 CAGTTGGTATACTGCTAAGGCAAGTCCTACTACTTCTATAGATATTCCTCTAGCTCGATA 609
Query 533 CTTACCAACATGGAAAGGAAATGTGATAGATGCAGAAATGGAGATGAATCCAGGTCGTGT 592
||| |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 610 CTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATGAATCCAGGTCGTGT 669
Query 593 TGTTGGTATGTCTCTATCTGTTAATGCACAAGGAGGTGGTTTCA-TTGGAGCTAAATCAG 651
| | |||||||| || || || || ||| |||| |||| || |||||||||||||||
Sbjct 670 TCTAGGTATGTCACTGTCCGTAAACGCAGAAGGTGGTG----CAGTTGGAGCTAAATCAG 725
Query 652 GCGCAGGTGATTTCC 666
| |||||||||||||
Sbjct 726 GAGCAGGTGATTTCC 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5