BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926607

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72430.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   608    1e-173


> AT1G72430.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr1:27264911-27265630 REVERSE LENGTH=720
Length=720

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 367/386 (95%), Gaps = 0/386 (0%)
 Strand=Plus/Plus

Query  15   TTAGCAATGGCCAAAGTTGGGAAGCTGACAAAGCTCAAGTCGGCTATGAAGAAATGGCCT  74
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  116  TTAGCAATGGCCAAAGTTGGGAAGCTGACAAAGCTTAAGTCGGCTATGAAGAAATGGCCT  175

Query  75   TCTTTCGCCAAGAACCACCACCATTCAACCTCCTCAGCGGCTGTTTCGGACGAGCTCTCA  134
            ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct  176  TCTTTCGCCAAGAACCACCACCACTCAACCTCCTCAGCCGCTGTTTCCGACGAACTCTCA  235

Query  135  GAGGACAACAATCTCCATGTGGTTTACGTTGGCCAAACTCGAAGACCCTACATGCTTAGA  194
            || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  236  GAAGACAACAATCTCCATGTGGTTTACGTTGGTCAAACTCGAAGACCTTACATGCTTAGA  295

Query  195  CCCGACATTATCTCTCATCCACTCTTTCAAGAACTCGTGGATCGGTCTTCTTCTAGATCC  254
            || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  CCAGACATCATCTCTCACCCACTCTTTCAAGAACTCGTGGATCGGTCTTCTTCTAGATCC  355

Query  255  GTCGAGCAAGATCGTGAAATTGTTGTAGCTTGTGAAGTCGTTTTGTTCGAGCACTTGTTG  314
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  356  ATCGAACAAGATCGTGAGATTGTTGTAGCTTGTGAAGTCGTTTTGTTCGAGCACTTGCTG  415

Query  315  TGGATGCTCAAGTCTGGTCAAGAAGGAGGCTCCGTCGAAGAATTGGCTGAGTTCTATACT  374
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  416  TGGATGCTCAAGTCTGGTCAAGAAGGAGGATCCGTTGAAGAATTGGCTGAGTTCTATACT  475

Query  375  TATTGACATCGGCCGATTCATTTTAT  400
            ||||||||||| |||||| |||||||
Sbjct  476  TATTGACATCGACCGATTGATTTTAT  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5