BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926612
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72470.1 | Symbols: ATEXO70D1, EXO70D1 | exocyst subunit exo... 3011 0.0
> AT1G72470.1 | Symbols: ATEXO70D1, EXO70D1 | exocyst subunit exo70
family protein D1 | chr1:27283693-27285895 FORWARD LENGTH=2203
Length=2203
Score = 3011 bits (1630), Expect = 0.0
Identities = 1831/1929 (95%), Gaps = 9/1929 (0%)
Strand=Plus/Plus
Query 3 TATTATTCTCATGAAACAATGGAACCACATGAACAAACTCACAGCGGCGACGGAGGAGGT 62
|||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 49 TATTATTCACATGAAACAATGGAACCACATGACCAAACTCACGGCGGCGACGGAGGAGAA 108
Query 63 GGTGGAG-ACTGTTCAGTTTCCGGTTTCGATTCGGTTGAGAAAGTCATCATCCGATGGGA 121
|| ||| |||||||||||||||| |||||||| | ||| ||||||||||||||||||||
Sbjct 109 GG-AGAGAACTGTTCAGTTTCCGGATTCGATTCAGCTGAAAAAGTCATCATCCGATGGGA 167
Query 122 CGCAACGGCGTCAGAAGAAGCAAGAGAGAAGATGATATTCAACGATCCACAAGAAGTTAA 181
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CGCGACGGCGTCAGAAGAAGCAAGAGAGAAGATGATATTCAACGATCCACAAGAAGTTAA 227
Query 182 GCTTTTCCTCAACGCCGTCGATGAAATCCA-AAAGTTTGTATCTTCCGGTGGAGAAATTG 240
|||| |||||||||||||||||||||||| ||| | |||||||||||| ||||| ||||
Sbjct 228 CCTTTACCTCAACGCCGTCGATGAAATCCAGAAA-TATGTATCTTCCGGCGGAGAGATTG 286
Query 241 AGAATCGAGCTAATTCAGCTATCCAGATCGCTATGGCTCGTCTCGAAGACGAGTTCCGGA 300
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||
Sbjct 287 AGAATCGAGCTAATTCAGCTATCCAGATAGCTATGGCTCGTCTTGAAGACGAGTTCAGGA 346
Query 301 ATATTCTCGTTTCTCATAGTTCTCCGATCAACTCTGATTCGTTAATGTTGTCGTCTTCGT 360
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 347 ATATTCTCGTTTCTCATAGTTCTCCGATCAACTCTGATTCGTTAATGCTGTCTTCTTCAT 406
Query 361 CTTCTTCTCAGCTTGAGGTTGATGAAGATGGAAGTAGTAGTAATAATGGTAACGAAGAAG 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTTCTTCTCACCTTGAGGTTGATGAAGATGGAAGTAGTAGTAATAATGGTAACGAAGAAG 466
Query 421 ATG---AGCAAGAGGAAGAAGAAACGGATCTTCTGAAACGATCCGGTTCGAGTGCAAGTA 477
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 467 ATGATCAACAAGAGGAAGAAGAAACGGATCTTCTGAAACGATCCGGTTCAAGTGCAAGTA 526
Query 478 CCGGTTCAGCGGCGGTTCGATTACCGACGGGGAGAGGTAGTTACAGTAGATCCACCAGTA 537
||||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 527 CCGGTTCAGCGACGGTTCGATTACCAACCGGAAGAGGTAGTTACAGTAGATCCACCAGTA 586
Query 538 GTATACGCGAGATCGAGCTGATTCCGATCGAATCGGTGGTGCATCTGAGCTGGATTGCTC 597
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 587 GTATACGCGAGATCGAGCTGATTCCGATCGAATCGGTGATTCATCTGAGCTGGATTGCTC 646
Query 598 GGCGAATGGTCTCCGCCGGTTATCTCCGTGAATGTATTCAAGTGTACGGAAGCGTTCGCA 657
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 647 GGCGAATGGTCTCCGCCGGTTATCTCCGTGAATGTATTCAAGTCTACGGAAGCGTTCGCA 706
Query 658 AATCCGCCGTTGATTCGAGTTTCCGGCGGTTAGGGATCGAGAAACTTAGCATCGGAGATG 717
|||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 707 AATCCGCCGTCGATTCAAGTTTCCGACGGTTAGGGATCGAGAAACTCAGCATCGGAGATG 766
Query 718 TTCAGAGGTTAAATTGGGAAGCGCTTGAGCAGAAGATCCGTCGTTGGATCCGAGCCGCTA 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 767 TTCAGAGGCTAAATTGGGAAGCGCTTGAGCAGAAGATCCGTCGTTGGATCCGAGCAGCTA 826
Query 778 AGATCTGTGTGAGAGTTGTCTTCGCGAGCGAGAAATTGCTCTGTGAGCATGTTTTTGAAA 837
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 827 AGATCTGTGTGAGAGTTGTGTTCGCAAGCGAGAAATTGCTCTGTGAGCATGTTTTTGAAA 886
Query 838 GCGTCGGAGCTGTCAACATCCACGAAGCTTGTTTCATGGAAACCGTTAAAGGTCCGGCGA 897
|||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 887 GCGTTGGAGCTGTCAATATCCACGAAGCTTGTTTCATGGAAACAGTCAAAGGTCCGGCGA 946
Query 898 TTCAGCTGTTTAACTTCGCGGAGGCGATTAGTATCAGCCGGAGATCGCCGGAGAAGCTTT 957
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 947 TTCAGCTTTTTAACTTCGCGGAGGCGATTAGTATCAGTCGGAGATCGCCGGAGAAGCTTT 1006
Query 958 TCAAGATCCTTGATCTCCATGACGCTTTGATTGAGCTATTGCCGGATATCGAGTCGGTCT 1017
| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| || |
Sbjct 1007 TTAAGATCCTTGATCTACACGACGCTTTGATTGAGCTTTTGCCTGATATCGAGTCAGTTT 1066
Query 1018 TCGATCTGAAATCTTCAGATTCGATTAGAGTTCAAGCGGCGGAGATATTATCGAGATTGG 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1067 TCGATCTGAAATCTTCAGATTCGATTAGAGTTCAAGCGGCGGAGATATTATCGAGATTAG 1126
Query 1078 CGGAAGCTGCGAGAGGGATATTATCGGAATTCGAAAACGCCGTTCTCCGTGAACCTTCTA 1137
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1127 CGGAAGCGGCGAGAGGGATATTATCGGAATTCGAAAACGCCGTTCTTCGTGAACCTTCTA 1186
Query 1138 GAGTTCCAGTTCCTGGAGGTACGATACATCCATTGACGAGGTACGTGATGAACTACATTA 1197
||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1187 GAGTTCCTGTTCCTGGAGGTACGATACATCCATTGACGAGGTATGTCATGAACTACATAA 1246
Query 1198 GCTTGATCTCAGAGTATAGACCAACGTTAATCGATCTCATCATGTCGAAGCCATCGAGAA 1257
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1247 GCTTGATCTCAGAGTATAGACCAACGTTGATCGATCTCATCATGTCGAAACCATCGAGAA 1306
Query 1258 ACTCAACGGATTCAAACACTCCAGATTTCGATTTCTCGGAGTTAGAGAACAACAAAGGTC 1317
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1307 ACGCAACGGATTCAAACACTCCAGATTTCGATTTCTCTGAGTTAGAGAATAACAAAGGTC 1366
Query 1318 CATTAGCACTTCATTTGATTTGGATCATAGTGATCTTGCAATTCAATCTTGAAGGCAAAT 1377
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1367 CATTAGCACTTCATTTGATTTGGATCATAGTGATATTGCAATTCAATCTCGAAGGCAAAT 1426
Query 1378 CAAAGTACTATAAAAACGCAGCTCTATCGCATCT-TTTCATCATGAACAACGCACATTAC 1436
||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||
Sbjct 1427 CAAAGTACTATAAAAACGCAGCTTTATCACATCTCTTT-ATCATGAACAACGCACATTAC 1485
Query 1437 ATTGTTCAGAAGATTAAAGGGTCGCCGGAGTTACGGGAAATGATTGGTGATCTTTACTTG 1496
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1486 ATTGTTCAGAAGATTAAAGGGTCACCGGAGCTACGGGAAATGATTGGTGATCTTTACTTG 1545
Query 1497 AGAAAGCTAACGGGTAAGTTCAGGCAAGCCGCGACGTATTACCAAAGAGCTGCTTGGGTT 1556
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1546 AGGAAGCTAACGGGTAAGTTTAGGCAAGCTGCGACGTATTACCAAAGAGCTGCTTGGGTT 1605
Query 1557 AAAGTCTTGTATTGTTTAAGAGATGAAGGGTTACATACAAAAGGAAGTTTCTCATCAGGC 1616
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1606 AAAGTCTTGTATTGTTTAAGAGATGAAGGTTTACATACGAAAGGAAGTTTCTCATCAGGT 1665
Query 1617 GTTTCGAGAAGTGCGTTGAGAGAGAGGTTTAAATCTTTTAATGCTTTGTTTGAGGAAGTT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 GTTTCGAGAAGTGCGTTGAGAGAGAGGTTTAAATCTTTTAATGCTTTGTTTGAGGAAGTT 1725
Query 1677 CATAGGGTTCAATCACAATGGTTGGTTCCAGATTCTCAGCTGAGGGAAGAGCTGAAGATT 1736
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1726 CATAGGGTTCAATCACAATGGTTGGTTCCGGATTCTCAGCTGAGGGAAGAGTTGAAGATT 1785
Query 1737 TCGATATTGGAGAAGCTTAGTCCAGCTTACAGATCGTTTCTCGGGAGGTTCAGGAGTCAC 1796
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1786 TCGATATTGGAGAAGCTTAGTCCCGCTTATAGATCGTTTCTTGGGAGGTTCAGGAGTCAT 1845
Query 1797 ATAGAGAGTGGGAAACACCCGGAGAATTACATCAAGATCTCAGTTGAAGATCTAGAGACC 1856
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1846 ATAGAGAGCGGGAAACATCCGGAGAATTACATCAAGATCTCAGTCGAAGATCTAGAGACC 1905
Query 1857 GAGGTTCTTGACTTGTTTGAGGGGTGTTCTGCAACTCAGCATCTGAGAAGACGATCCGAG 1916
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1906 GAGGTTCTTGATTTGTTCGAGGGGTATTCTGCAACTCAGCATCTGAGAAGACGATCCGAG 1965
Query 1917 TGAGAGAGA 1925
|||||||||
Sbjct 1966 TGAGAGAGA 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96033642585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5