BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926613
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72480.1 | Symbols: | Lung seven transmembrane receptor fam... 2553 0.0
> AT1G72480.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr1:27286058-27288368 REVERSE LENGTH=1805
Length=1805
Score = 2553 bits (1382), Expect = 0.0
Identities = 1503/1563 (96%), Gaps = 2/1563 (0%)
Strand=Plus/Plus
Query 1 TCTCTGCAACAAATTGGGTTTACAATGTTGCTCCATCTTCTTCTTCTGCTATGTCTGA-C 59
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 6 TCTCTGCAACGAATTGGGTTTACAATGTTGCTCCATCTTCTTCTTCTGCTATGTCT-ATC 64
Query 60 TTCTTCTTTGATAGTCCAAGCGTCGGTGCATGAGTACCGAAACGAGAGATTCATGTCTAA 119
||||||||||| ||| ||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct 65 TTCTTCTTTGAAAGTTCAAGCATCGGTGCATGAGTACCGAAGCGAGAGATTCGTGTCTAA 124
Query 120 AGGTAACGCCTTTGTCTTCCATGGTGGCAGTGAAGGCATCTACTCTTCTTCTCCCTCTGA 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 125 AGGTAACGCCTTTGTCTTCCATGGTGGCAGTGAAGGCATCTACTCCTCTTCTCCCTCCGA 184
Query 180 TAACTTCACTTCCGACTCCGATTCCGCTTCCTTTATCCGGTTTGAGAAGATCAAGTTTCA 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 185 TAACTTCACTTCCGACTCCGATTCCGTTTCCTTTATCCGGTTTGAGAAGATCAAGTTTCA 244
Query 240 GAGGTCTGAGGAAGTTTCTAACAGATCCTCATTACCTGTCCAAGCCGTGGTTTTCGAGGT 299
|||| |||||||||| |||||| ||||||| ||| || |||| |||||||||||||||||
Sbjct 245 GAGGCCTGAGGAAGTGTCTAACCGATCCTCGTTATCTATCCATGCCGTGGTTTTCGAGGT 304
Query 300 AGAGGACCGGGAAAACATTGGAGGATCTGCTTATGGTGGGCAAAGAGCTGTGTGTTGCAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AGAGGACCGGGAAAACATTGGAGGATCTGCTTATGGTGGGCAAAGAGCTGTGTGTTGCAC 364
Query 360 ATCTGATCTGGCGAAACTCGGCGTTTGCTCACACGGAGACGTCATTTACCGCCCTTCTGC 419
|||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 365 ATCTGATCTGGCAAAACTCGGTGTTTGCTCACACGGAGATGTCATTTACCGTCCTTCTGC 424
Query 420 TAAAGATTCTGGCTGGCCACAAGTGTTTGGTGTCTCGTTTGCTGAGAATGAGTTATCTGT 479
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 425 TAAAGATTCTGGTTGGCCACAAGTGTTTGGTGTCTCGTTGGCTGAGAATGAGTTTTCTGT 484
Query 480 TACGCTGCCTACAAGATCGATCCAGGTCACTAGGACCGGGATGTACAACCTCTACTTCAT 539
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TATACTGCCTACAAGATCGATCCAGGTCACTAGGACCGGGATGTACAACCTCTACTTCAT 544
Query 540 TCACTGTGATTCTGATCTCAAGGATTTGGTTGTTGAAGGGAAGACCATTTGGAAAAACCC 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TCATTGTGATTCTGATCTCAAGGATTTGGTTGTTGAAGGGAAGACCATTTGGAAAAACCC 604
Query 600 TACCGGATATCTACCCGGTAGAATGGCTCCATTGATGTACTTTTACGGGTTCATGTCGCT 659
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TACTGGATATCTACCTGGTAGAATGGCTCCATTGATGTACTTTTACGGGTTCATGTCGCT 664
Query 660 TGCTTTTGTGTTGCTTGGCATCTTCTGGTTTTCGCAGTGTGCTAGATTCTGGAGAGAAGT 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 665 TGCTTTTGTGTTGCTTGGCATCTTCTGGTTTTCTCAGTGTGCTAGATTCTGGAGAGAAGT 724
Query 720 GCTTCCGTTGCAGAATTGCTTAACTTTGGTGATAACACTGGGGATGTGTGAGATGGCACT 779
|||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 725 GCTTCCGTTGCAAAATTGCTTAACTCTGGTGATAACATTGGGGATGTGTGAGATGGCACT 784
Query 780 TTGGTATTTTGATTACGCTGAATTCAATGAGACTGGGATCAGGCCAACCGTCATCACCAT 839
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 785 TTGGTATTTTGATTACGCTGAATTCAATGAGACTGGGATTAGGCCAACCGTGATCACCAT 844
Query 840 CTGGGCGGTCACGTTCGGTTCTATCAAGCGTACAAGTGCTCGTATTATCATCCTGATGGT 899
|||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 845 CTGGGCAGTCACGTTCGGTTCTATCAAGCGTACGAGTGCTCGTATTATCATCTTGATGGT 904
Query 900 TTCAATGGGCTACGGTGTTGTGAGACCTACGCTCGGGGGTTTCACATCAAAGGTTATCAT 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 905 TTCAATGGGCTACGGTGTTGTGAGACCTACGCTCGGGGGATTCACATCAAAGGTTATCAT 964
Query 960 GCTTGGGGTCACCTTCTTTATTGCATCTGAAATTCTTGAGCTGATGGAAAATGTCGGTGC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 965 GCTTGGGGTCACCTTCTTTATTGCATCTGAAATTCTTGAGCTGATGGAAAATGTGGGTGC 1024
Query 1020 TGTCAGTGATCTCTCAGGGAAAGCTCGACTGTTTTTCGTCCTTCCTGTTGCAATATTGGA 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1025 TGTCAGTGATCTCTCAGGGAAAGCTCGACTGTTTTTCGTTCTTCCTGTTGCAATATTGGA 1084
Query 1080 TGCGTTCTTCATCATATGGATATTCAAATCTCTTTCTGCTACGTTCAAGAAGCTTCAGAC 1139
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1085 TGCGTTCTTCATCATATGGATATTCAAATCTCTCTCTGCTACTTTCAAGAAGCTTCAGAC 1144
Query 1140 CAGAAGGTTGTTGGTCAAGTTGGATATATACAGAAAGTTCACAAATGCTTTGGCCGTAGC 1199
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1145 CAGAAGGTTGTTGGTCAAGTTGGATATATACAGAAAATTCACAAATGCTTTGGCTGTAGA 1204
Query 1200 CATTTTGGTTTCCTTGGGTTGGATTTGCTACGAGCTTTATTTCAAGTCGAAGGATGTTTA 1259
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CATATTGGTTTCCTTAGGTTGGATTTGCTACGAGCTTTATTTCAAGTCGAAGGATGTTTA 1264
Query 1260 CAACGAACATTGGCAAAACGCTTGGATTATCCCGGCCTTTTGGCAACTGCTCTCCTTCTC 1319
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1265 CAACGAACATTGGCAAAACGCTTGGATCATCCCAGCCTTTTGGCAACTGCTATCCTTCTC 1324
Query 1320 GCTCCTAATTGTCATCTGCTCTCTCTGGGCTCCATCTCAGAACTCGACTAGGTACGCATT 1379
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GCTCCTAATTGTTATCTGCTCTCTCTGGGCTCCATCTCAGAACTCGACTAGGTACGCATT 1384
Query 1380 CTCTGGATCTTCTGGAGATACAAGCGCAGAGTTTGAGAAGGACGATTACACACTAACTCT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1385 CTCTGGATCTTCTGGAGATACAAGCGCAGAGTTTGAGAAGGACGATTACACGCTAACCCT 1444
Query 1440 CATTAAACCATCTCCAGTTCCTTCTCACGATGTCAAGAACCTCTCAGAAACCAGACTTTT 1499
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1445 CATTAAACCATCTCCAATTCCTTCTCATGAAGTCAAGAACCTCTCAGAAACCAGACTTTT 1504
Query 1500 ACAAGCTGATGAAGGAGAACCAGAAAAAGATTTGGAGGAAGACAAAAGGGAGTAAAGTAG 1559
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1505 ACCAGCTGATGAAGGAGAACCAGAAAAAGATTTGGAGGAAGACAAAAGGGAGTAAAGAAG 1564
Query 1560 TGA 1562
|||
Sbjct 1565 TGA 1567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5