BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926625

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72600.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   409    1e-113


> AT1G72600.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr1:27338125-27338891 FORWARD LENGTH=767
Length=767

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 373/440 (85%), Gaps = 35/440 (8%)
 Strand=Plus/Plus

Query  10   AGAGTTCTATTAATGGAAACGCCATTACAAAGTTTGAGActttttcttctctgcttcgtc  69
            ||| |||||  ||||||| |  ||| |||||||| ||||||||||||| |||||||||||
Sbjct  136  AGATTTCTACCAATGGAACCTTCATCACAAAGTTCGAGACTTTTTCTTTTCTGCTTCGTC  195

Query  70   ttcttcttcatctctgcttctatcttcGTCGACTCACAATCACAAGATTCTT-C-C-ATT  126
            ||||||||||||||||||||||||||||| |||||| ||||||||||||||| | | |||
Sbjct  196  TTCTTCTTCATCTCTGCTTCTATCTTCGTTGACTCAAAATCACAAGATTCTTCCTCAATT  255

Query  127  ACTCCTCCTCCACCACCGCCT---CCGCCA-T-T-CTTAAATCCACCGCCGCCTCCGT-T  179
            ||||| || ||||| || |||   |||||| | | ||||  |||||||||| |||| | |
Sbjct  256  ACTCCACCACCACCGCCTCCTCCACCGCCACTATCCTTATCTCCACCGCCGTCTCC-TAT  314

Query  180  AA-GGGTCGTTGAGAGTAACAAGGCGATTCACGAG-------A--AGCGAAGaaaaaaaT  229
            || || |  ||||||||||||||||||||||||||       |  | |||||||| ||||
Sbjct  315  AACGGCT-ATTGAGAGTAACAAGGCGATTCACGAGAAACATCACCACCGAAGAAAGAAAT  373

Query  230  GGCGACAGAGAAGACACCATAAACACCCACCACCG------CC---GCAGCAGAAGCTGA  280
            || |||||||||||||||||||||| |||||||||      ||   | |||||||| |||
Sbjct  374  GGAGACAGAGAAGACACCATAAACATCCACCACCGCCTCCTCCGAAGAAGCAGAAGGTGA  433

Query  281  ACATGGGAAAGACGGTGGGGCTTTTCTTCGCCGGTGTAGATGCAGCTTTGCAAGTAGTTG  340
            |||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  434  ACACAGGAAAGACGGTGGGGCTTTTCTTCGCCGGCGTAGCTGCAGCTTTGCAAGTAGTTG  493

Query  341  TTGCTGCTTTCTTGATTTTCAAAAGAAGACAGCTTCTCCTTAAGATCAATGATAGACACT  400
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  494  TTGCTGCTTTCTTGATTTTCAAAAGAAGACAGCTTCTTCTTAAGATCAATGATAGACACT  553

Query  401  GAGTGAGAGATTCCAAGCTT  420
            ||   |||  ||||||||||
Sbjct  554  GAC--AGA--TTCCAAGCTT  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20006564102


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5