BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926633
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72680.1 | Symbols: ATCAD1, CAD1 | cinnamyl-alcohol dehydrog... 1716 0.0
> AT1G72680.1 | Symbols: ATCAD1, CAD1 | cinnamyl-alcohol dehydrogenase
| chr1:27359232-27361016 REVERSE LENGTH=1322
Length=1322
Score = 1716 bits (929), Expect = 0.0
Identities = 1019/1063 (96%), Gaps = 4/1063 (0%)
Strand=Plus/Plus
Query 22 ATGAGTTCTTCAGAGAGTGGGGAAAACGAGTGCATGTGTTGGGCTGCAAAAGATCCATCT 81
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 141 ATGAGTTCTTCAGAGAGTGTGGAAAACGAGTGCATGTGTTGGGCTGCAAGAGATCCATCT 200
Query 82 GGTCTTCTTTCTCCTCACAAAT-TCACTCGCAGGTCTGTTACAAGTGACGATGTTTCACT 140
||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||||
Sbjct 201 GGTCTTCTTTCTCCTCA-TACTATCACTCGCAGGTCTGTTACAACTGACGATGTTTCACT 259
Query 141 CACAATCACTCATTGTGGAGTGTGTTACGCTGATGTTATCTGGACTAGAAACCAACATGG 200
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 260 CACAATCACTCATTGTGGAGTGTGTTACGCTGATGTTATCTGGAGTAGAAACCAACATGG 319
Query 201 AGACTCTAAGTACCCTTTGGTTCCTGGACATGAGATTGCTGGAATAGTGACTAAGGTTGG 260
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 320 AGACTCCAAGTACCCTTTGGTTCCTGGGCATGAGATTGCTGGAATAGTGACTAAGGTTGG 379
Query 261 GTCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACATATGTTAACTC 320
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 380 GCCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACGTATGTTAACTC 439
Query 321 GTGCAGGGAGTGTGAATATTGTAACGAAGGACAAGAAGTTAATTGTGCAAAAGGAGTTTT 380
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 440 CTGCAGGGAGTGTGAATATTGTAATGAAGGACAAGAAGTTAATTGTGCGAAAGGAGTTTT 499
Query 381 TACTTTCAATGGTATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCCAGCCACAT 440
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 500 TACTTTCAATGGCATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCTAGTCACAT 559
Query 441 TGTTGTTCATGAGAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGC 500
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGTTGTTCATGAAAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGC 619
Query 501 ACCATTACTCTGTGCTGGAATCACGGTTTTTGCGCCTATGATGCGTCACAATATGAATCA 560
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 620 ACCATTACTCTGTGCTGGAATCACGGTTTATGCTCCTATGATGCGTCACAATATGAATCA 679
Query 561 ACCTGGTAAATCTCTTGGGGTGATTGGGCTAGGTGGTCTTGGGCACATGGCAGTTAAATT 620
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 680 ACCTGGTAAATCTCTTGGGGTGATCGGGCTAGGTGGTCTTGGACACATGGCGGTTAAGTT 739
Query 621 TGGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAGGA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 740 TGGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAAGA 799
Query 681 AGCTTTGAATCTGCTGGGAGCTGAGAATTTTGTTATCTCGTCTGACCATGACCAGATGAA 740
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 800 AGCTTTGAATCTGCTAGGAGCTGAGAATTTCGTTATCTCATCTGACCATGACCAGATGAA 859
Query 741 GGCACTAGCGAAATCTCTAGACTTTATCA-TTGATACAGCATCTGGTGATCACGCGTTTG 799
|||||||| |||||||||||||||| | | |||| |||||||||||||||||||||||||
Sbjct 860 GGCACTAGAGAAATCTCTAGACTTTCT-AGTTGACACAGCATCTGGTGATCACGCGTTTG 918
Query 800 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTCCTGGTTGGTTTCCCAAGTG 859
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTATTGGTTGGTTTCCCAAGTG 978
Query 860 AAATTAAAATCAGTCCTGCCAATCTCAATCTTGGTATGAGAATGCTCGCGGGAAGTGTAA 919
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 979 AAATTAAAATCAGTCCTGCCAATCTCAATCTTGGTATGAGAATGCTCGCTGGAAGTGTAA 1038
Query 920 CCGGGGGTACCAAAATAACACAGGAAATGCTAGATTTCTGTGCAGCTCATAAGATTTACC 979
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 1039 CCGGGGGGACCAAAATAACACAGCAAATGTTAGATTTCTGTGCAGCTCATAAGATTTATC 1098
Query 980 CAAACATAGAGGTAATTCCCATTCAGAATATAAACGAAGCTCTCGAAAGAGTGGTGAAGA 1039
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1099 CAAACATAGAGGTGATTCCCATTCAAAAGATAAACGAAGCTCTCGAAAGAGTGGTGAAGA 1158
Query 1040 AGGACATCAAGTACCGTTTCGTGATTGACATCAAGAACTCCCT 1082
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AGGACATCAAGTACCGTTTCGTGATTGACATCAAGAACTCCCT 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5