BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926634

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72690.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   431    2e-120


> AT1G72690.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G17490.1); 
Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27361154-27361919 
FORWARD LENGTH=507
Length=507

 Score =  431 bits (233),  Expect = 2e-120
 Identities = 279/301 (93%), Gaps = 3/301 (1%)
 Strand=Plus/Plus

Query  6    AGATCAAGAACCATCGATGGCGGATCAAAACCGATCAGAGGAGAAGACGGTGAAATCGCC  65
            ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  55   AGA-CAAAAACCATCGATGGCGGATCAAAACCGATCAGAGGAGAAGACTGTGAAATCGCC  113

Query  66   TAATGTGTTTGAACGAGTCAAAGAAGAAATAGAAGCAATGGGTCATCATGAAAAGTCAAA  125
             ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct  114  AAATGTGTTTGAACGAGTTAAAGAAGAAATAGAGGCAATGGGTCATCATGAAAAGTCCAA  173

Query  126  GAGTCATCACCATCACAAAGAGACTCATGGAACAAGTGACGATATTGATCAGAACACTCC  185
            ||||| ||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct  174  GAGTCGTCACCATGACAAAGAGACTCATGGAACAAGTGACGACATTGATGAGAGCACTCC  233

Query  186  AATTGATTATGTGAAGGGACCTGGTTTCTTTCAACGAGTCAAAGAAGAGATTGAAGCCAT  245
            ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct  234  AATTGATTATGTGAAAGGACCTGGTTTCTTTCAACGACTGAAAGAAGAGATTGAAGCTAT  293

Query  246  CTTTAATTCTGTTACTCCCAAGCGTTCTTCAAAGAAATGAACTT-TCATTATATCTGTGT  304
            ||||||| |||||||||||||||||||||||||||| |||| || | || ||||||||||
Sbjct  294  CTTTAATGCTGTTACTCCCAAGCGTTCTTCAAAGAAGTGAAATTGT-ATCATATCTGTGT  352

Query  305  T  305
            |
Sbjct  353  T  353



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14125237469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5