BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926637

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72720.1 | Symbols:  | Protein of unknown function (DUF3511)...   545    1e-154


> AT1G72720.1 | Symbols:  | Protein of unknown function (DUF3511) 
| chr1:27376755-27377395 REVERSE LENGTH=641
Length=641

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 395/438 (90%), Gaps = 27/438 (6%)
 Strand=Plus/Plus

Query  2    GGTTTGTTTGCAAGTGAAGATGTTCAGATCCAAGTCATGCAGAGAAGAGATCAGAAGTAG  61
            |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  91   GGTTTGTTTGCAAGTGAAGATGTTCAGATCTAAGTCATGCAGAGAAGAGACCAGAAGTAG  150

Query  62   CAGCATCACCCACAAGTACCATTGCTTCAGTCATGGAGGAAAATCAGAAGCAGAAGCAGC  121
            |||||||||| |||||||||||||||||||||||||| |  ||  | || ||||| ||| 
Sbjct  151  CAGCATCACCAACAAGTACCATTGCTTCAGTCATGGA-G--AA--A-AATCAGAATCAG-  203

Query  122  ACCAAGCCCAACAAACACAAACCAGCAGCCACCAGTGATGATGAGATCATACAGCACATC  181
               ||   |  |  | |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  204  ---AA---C--C--A-ACAAACCAGCAGCCACCAGTGATGATGAGATCTTACAGTACATC  252

Query  182  AAC-T-T-A--C--A--AGAATCCAACAATTGTGAGAGACGATTCCAACAGTAAATCCAA  232
            ||| | | |  |  |  ||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct  253  AACTTATAATGCATACCAGAATCCAACAATTGTGAGAGACGACTCCAACAATAAATCGAA  312

Query  233  GAGAAGCAATAAGGTGAAGAAGAAAGGGTTCACGGGTTTGTGTGAGGCAGAGATTCAGAG  292
            ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct  313  GAGAAGCAATAAGGTGAAGAAGAAAGGATTTAAGGGTTTGTGTGAGGCAGAGATTCAGAG  372

Query  293  AAAGAAGAGAGTGGCTTCTTATAATGTGTATGGTGTTGAAGGGAGAGTGAAGGGATCTAT  352
             |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  373  GAAGAAGAGAGTGGCTTCTTATAATGTGTATGGTGTTGAAGGGAGAGTGAAAGGATCTAT  432

Query  353  GAAGAAAAGCTTCAAATGGTTCAAGGAGACTTGTTCAAATGCTGTCTATGGTTTGTGGTG  412
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  433  GAAGAAAAGCTTCAAATGGTTCAAGGAGACTTGTTCAAACGCTGTCTATGGTTTGTGGTG  492

Query  413  ATCCAACCACAAATCTTC  430
            ||||||||||||||||||
Sbjct  493  ATCCAACCACAAATCTTC  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5