BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926644
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 599 1e-170
> AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27397216-27398500 FORWARD LENGTH=1285
Length=1285
Score = 599 bits (324), Expect = 1e-170
Identities = 357/373 (96%), Gaps = 2/373 (1%)
Strand=Plus/Plus
Query 464 CAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGTGGCAATGGTCAATCGATCTCTG 522
||||||||||||||| | |||||||||| |||||||||| |||||||| |||| ||||||
Sbjct 704 CAAGCCAGCTGCTAA-AGATTCTTTATTTTCTGTTGGTGTCAATGGTCGATCGTTCTCTG 762
Query 523 TTACGGGATTTGACTCTTCCCTTCCTGTGGATGATATCAAGAGCGCATTGAGTAAATATT 582
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 763 TTACGGGATTTGACGCTTCCCTTCCTGTGGATGATATAAAGAGCGCATTGAGTAAATATT 822
Query 583 TCAGTTCTTTTGGAGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 642
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TCAGTTCTTTTGGGGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 882
Query 643 CCTTAGGATATGCTTACGTTGATCTGAAAGAAGGAGCAGACAAGGCGTTGGAACTTGGTA 702
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 883 CCTTAGGATATGCTTACATTGATCTGAAAGAAGGAGCAGAGAAGGCGTTGGAACTTGGTA 942
Query 703 CACATGACGTGGGAGGATGGAATCTTGTAGTTGGTAAGGCTGAACCGATACGCAGTGGAA 762
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 943 GACATGACGTGGGAGGATGGGATCTTGTAGTTGGTAAGGCTGAACCGATTCGCAGTGGAA 1002
Query 763 GTACTTGGCCTTTTCCTGGCCGTTGTGGCAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 822
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1003 GTACTTGGCCTTTTCCTGGCCGTTGTGGTAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 1062
Query 823 TTGAAGCTTTGGT 835
||||| |||||||
Sbjct 1063 TTGAACCTTTGGT 1075
Score = 475 bits (257), Expect = 3e-133
Identities = 312/338 (92%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 166 AGATCACGAAAGGATTCGTCAGGAAAAACTTTGA-GAAGAAGGAGATGATCAAAGAATTC 224
|||||||||||| || |||| ||||||| |||| | |||||||||||||||||||||||
Sbjct 160 AGATCACGAAAGTATCCGTCTTGAAAAACCTTGATG-AGAAGGAGATGATCAAAGAATTC 218
Query 225 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 278
Query 285 TTGGCAACAAAGGCGGATATACAGGAGCTTTTCATCCCAGCCAAGTGTGAGAAAGTTCCT 344
||||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 279 TTGGCAATAAAGGCGGATATACAGGAGCTTCTCATCTCAGCCAAGGGTGAGAAAGTTCCT 338
Query 345 GCCATGAAGCCA-CTTGCTAAGGCTGCTTCTGACAGCGATGACTCATACATGGACACTTC 403
||||||||| | || ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 339 GCCATGAAGACTTCT-GCTAAGGCTTCTTCTGAGAGCGATGACTCATACATGGACACTTC 397
Query 404 TTCGGAGGATGAATCATCTTCTGGTGAGGAACTTGCAAAGAAACCTGCTGCAAGTGCCGC 463
||||||||||||||| ||||||| |||||||| || ||| ||||||||||||||||||||
Sbjct 398 TTCGGAGGATGAATCGTCTTCTGCTGAGGAACCTGTAAACAAACCTGCTGCAAGTGCCGC 457
Query 464 CAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGT 500
|||||||||| |||| | ||||||||||||||| ||||
Sbjct 458 CAAGCCAGCTACTAA-AGATTCTTTATTCTCTGCTGGT 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5