BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926644 Length=838 Score E Sequences producing significant alignments: (Bits) Value AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 599 1e-170 > AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:27397216-27398500 FORWARD LENGTH=1285 Length=1285 Score = 599 bits (324), Expect = 1e-170 Identities = 357/373 (96%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 464 CAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGTGGCAATGGTCAATCGATCTCTG 522 ||||||||||||||| | |||||||||| |||||||||| |||||||| |||| |||||| Sbjct 704 CAAGCCAGCTGCTAA-AGATTCTTTATTTTCTGTTGGTGTCAATGGTCGATCGTTCTCTG 762 Query 523 TTACGGGATTTGACTCTTCCCTTCCTGTGGATGATATCAAGAGCGCATTGAGTAAATATT 582 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 763 TTACGGGATTTGACGCTTCCCTTCCTGTGGATGATATAAAGAGCGCATTGAGTAAATATT 822 Query 583 TCAGTTCTTTTGGAGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 642 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 823 TCAGTTCTTTTGGGGAGATCACACGCGTATTTGTTCCCCCAAGCCACGGAACCGGTGGTT 882 Query 643 CCTTAGGATATGCTTACGTTGATCTGAAAGAAGGAGCAGACAAGGCGTTGGAACTTGGTA 702 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 883 CCTTAGGATATGCTTACATTGATCTGAAAGAAGGAGCAGAGAAGGCGTTGGAACTTGGTA 942 Query 703 CACATGACGTGGGAGGATGGAATCTTGTAGTTGGTAAGGCTGAACCGATACGCAGTGGAA 762 ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 943 GACATGACGTGGGAGGATGGGATCTTGTAGTTGGTAAGGCTGAACCGATTCGCAGTGGAA 1002 Query 763 GTACTTGGCCTTTTCCTGGCCGTTGTGGCAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 822 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1003 GTACTTGGCCTTTTCCTGGCCGTTGTGGTAATCAGGGCCGTTGTACCTTCTGTTGAAGGC 1062 Query 823 TTGAAGCTTTGGT 835 ||||| ||||||| Sbjct 1063 TTGAACCTTTGGT 1075 Score = 475 bits (257), Expect = 3e-133 Identities = 312/338 (92%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 166 AGATCACGAAAGGATTCGTCAGGAAAAACTTTGA-GAAGAAGGAGATGATCAAAGAATTC 224 |||||||||||| || |||| ||||||| |||| | ||||||||||||||||||||||| Sbjct 160 AGATCACGAAAGTATCCGTCTTGAAAAACCTTGATG-AGAAGGAGATGATCAAAGAATTC 218 Query 225 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 GCTGATCGTCTTCAGCGTCTCGAAGCAAAGGTGGATTTGTTGGTAACAAAGGCGGATTTG 278 Query 285 TTGGCAACAAAGGCGGATATACAGGAGCTTTTCATCCCAGCCAAGTGTGAGAAAGTTCCT 344 ||||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 279 TTGGCAATAAAGGCGGATATACAGGAGCTTCTCATCTCAGCCAAGGGTGAGAAAGTTCCT 338 Query 345 GCCATGAAGCCA-CTTGCTAAGGCTGCTTCTGACAGCGATGACTCATACATGGACACTTC 403 ||||||||| | || ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 339 GCCATGAAGACTTCT-GCTAAGGCTTCTTCTGAGAGCGATGACTCATACATGGACACTTC 397 Query 404 TTCGGAGGATGAATCATCTTCTGGTGAGGAACTTGCAAAGAAACCTGCTGCAAGTGCCGC 463 ||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||||||| Sbjct 398 TTCGGAGGATGAATCGTCTTCTGCTGAGGAACCTGTAAACAAACCTGCTGCAAGTGCCGC 457 Query 464 CAAGCCAGCTGCTAATA-ATTCTTTATTCTCTGTTGGT 500 |||||||||| |||| | ||||||||||||||| |||| Sbjct 458 CAAGCCAGCTACTAA-AGATTCTTTATTCTCTGCTGGT 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40840361511 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5