BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926656

Length=1059
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28823.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   346    3e-94


> AT5G28823.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; EXPRESSED IN: cultured cell; BEST 
Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) 
family protein (TAIR:AT2G07760.1); Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10837849-10839826 
REVERSE LENGTH=1707
Length=1707

 Score =  346 bits (187),  Expect = 3e-94
 Identities = 307/364 (84%), Gaps = 11/364 (3%)
 Strand=Plus/Plus

Query  678   TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT  736
             ||||||| | || ||| ||||||||||||||||||||||| | | ||| || ||||||||
Sbjct  1344  TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT  1402

Query  737   CGGCTTCAGTTGTCCAATCTAGTGCT-A-A-TTCTTTTCGCAAAGCTTCTAGTTCAAATA  793
             |  || |||  ||| |||||||| || | | |||||| ||||||||||||||||||||||
Sbjct  1403  CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA  1462

Query  794   AATTTGCAGTGCTCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-AGGAGA  851
             ||||||| ||||| |||||||||||||||||||| |||| | || |||||| | | | | 
Sbjct  1463  AATTTGCGGTGCTGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATG-G-  1519

Query  852   TTT-TTCTTCCGGGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCAT  910
             ||  ||||  |  ||| || ||||||||||||||||||||  ||||||| |||||| |||
Sbjct  1520  TTGATTCTGACAAGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACAT  1579

Query  911   TTTCAGAAAAATATCTACATGACAGACCGTTGCAATTGCCGATCATGGCAATAAATATGG  970
             |||||| |||| |||| || ||||||||||||||||| |||| || |||||||||||| |
Sbjct  1580  TTTCAGGAAAACATCTCCAAGACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATTG  1639

Query  971   GTCGTGGAGGAAGAGGAGGGGGAAGACGCGGTCGAGGGAATCGGGGTCGACGAGGTGGGT  1030
             ||| ||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||
Sbjct  1640  GTCATGGAGGAAGAGGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTGGGT  1699

Query  1031  TTGG  1034
             ||||
Sbjct  1700  TTGG  1703



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51857162985


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5