BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926659
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72920.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 457 4e-128
AT1G72940.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 442 1e-123
AT1G72910.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 427 3e-119
AT1G72930.1 | Symbols: TIR | toll/interleukin-1 receptor-like |... 424 4e-118
AT1G72900.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 412 9e-115
> AT1G72920.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr1:27437928-27439091 FORWARD LENGTH=1070
Length=1070
Score = 457 bits (247), Expect = 4e-128
Identities = 305/333 (92%), Gaps = 4/333 (1%)
Strand=Plus/Plus
Query 4 AGAGAATCAGAAATCAAAATGTCTTCTGCTACTGCGACTAAGTACGATGTTTTTCTGAGT 63
||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 2 AGAGAATCAAAAATCAAAATGTCTTCTCCTACTGCGACTAAGTACGACGTCTTTCTGAGT 61
Query 64 TTCAGAGGACTCGACACTCG-CAGCACCTTCATCAGCTTTCTCTACAAAGAACTAGTTCG 122
|||||||||||||||||||| | ||| ||||||||| ||||||||||||||||| |||||
Sbjct 62 TTCAGAGGACTCGACACTCGTC-GCAACTTCATCAGTTTTCTCTACAAAGAACTCGTTCG 120
Query 123 AATG-AACATTCGAACTTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGC 181
|| | || ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
Sbjct 121 AA-GAAAAATTCGAACTTTCAAAGACGACAAGGAGCTCGAGAATGGCCGGAGGATTTCTC 179
Query 182 CGGAGCTCAAACGAGCCATCGAGGAGTCGAGATTCGCCGTCGTTGTTTTCTCCGAGAACT 241
||||||||||||| |||||||||||||||| ||||||||||||||| |||| | |||||
Sbjct 180 CGGAGCTCAAACGCGCCATCGAGGAGTCGAAATTCGCCGTCGTTGTGGTCTCTGTGAACT 239
Query 242 ACGCTGCGTCTCCTTGGTGTCTCGAAGAGCTCGTGAAGATCATGGATTTAGAGAACAAGG 301
||||||||||||||||||||||||| ||||| |||||||| |||||||| || |||||||
Sbjct 240 ACGCTGCGTCTCCTTGGTGTCTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGG 299
Query 302 GTTCCATCACCGTGATGCCCATCTTCTACGGCG 334
||||||||||||||||||| |||||||||||||
Sbjct 300 GTTCCATCACCGTGATGCCTATCTTCTACGGCG 332
> AT1G72940.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing
protein | chr1:27442238-27443856 FORWARD LENGTH=1525
Length=1525
Score = 442 bits (239), Expect = 1e-123
Identities = 301/331 (91%), Gaps = 4/331 (1%)
Strand=Plus/Plus
Query 4 AGAGAATCAGAAATCAAAATGTCTTCTGCTACTGCGACTAAGTACGATGTTTTTCTGAGT 63
||||||||| ||||||||||| ||||| |||||||||||||||| ||||| |||||||||
Sbjct 23 AGAGAATCAAAAATCAAAATGACTTCTCCTACTGCGACTAAGTATGATGTCTTTCTGAGT 82
Query 64 TTCAGAGGACTCGACACTCG-CAGCACCTTCATCAGCTTTCTCTACAAAGAACTAGTTCG 122
||||||||| |||||||||| | ||| ||||||||| ||||||||||||||| | |||||
Sbjct 83 TTCAGAGGAGTCGACACTCGTC-GCAACTTCATCAGTTTTCTCTACAAAGAATTCGTTCG 141
Query 123 AATGAACATTCGAACTTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGCC 182
|| ||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||
Sbjct 142 AAGGAAAATTCGAACTTTCAAAGACGACAAGGAGCTTGAGAATGGCCGGAGGATTTCTCC 201
Query 183 GGAGCTCAAACGAGCCATCGAGGAGTCGAGATTCGCCGTCGTTGTTTTCTCCG-AGAACT 241
|||||||||||| |||||||||||||||| |||||||||||||||| |||| | | ||||
Sbjct 202 GGAGCTCAAACGCGCCATCGAGGAGTCGAAATTCGCCGTCGTTGTTGTCTCTGTA-AACT 260
Query 242 ACGCTGCGTCTCCTTGGTGTCTCGAAGAGCTCGTGAAGATCATGGATTTAGAGAACAAGG 301
||||||||||||||||||||||||| ||||| |||||||| |||||||| || |||||||
Sbjct 261 ACGCTGCGTCTCCTTGGTGTCTCGATGAGCTTGTGAAGATTATGGATTTCGAAAACAAGG 320
Query 302 GTTCCATCACCGTGATGCCCATCTTCTACGG 332
||||||||||||||||||| |||||||||||
Sbjct 321 GTTCCATCACCGTGATGCCTATCTTCTACGG 351
> AT1G72910.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing
protein | chr1:27435614-27437144 FORWARD LENGTH=1420
Length=1420
Score = 427 bits (231), Expect = 3e-119
Identities = 302/335 (90%), Gaps = 10/335 (3%)
Strand=Plus/Plus
Query 5 GAGAATCAGAAATCAAAATGTCTTCTGC-TACTGCGACTAAGTACGATGTTTTTCTGAGT 63
|||||||| ||||||||||||||||| | |||||| ||||||||||||||||| || |||
Sbjct 4 GAGAATCAAAAATCAAAATGTCTTCT-CATACTGCAACTAAGTACGATGTTTTCCTAAGT 62
Query 64 TTCAGAGGAC-TCGACACTCG-CAGCACCTTCATCAGCTTTCTCTACAAAGAACTAGTTC 121
|||||||| | | |||||||| ||| | ||||||||| ||||||||||||||||| ||||
Sbjct 63 TTCAGAGGGCAT-GACACTCGCCAG-AACTTCATCAGTTTTCTCTACAAAGAACTGGTTC 120
Query 122 GAATGAACATTCGAACTTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGC 181
||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGGAGCATTCGAACCTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGT 180
Query 182 CGGAGCTCAAACG-AGCCATCGAGGAGTCGAGATTCGCCGTCGTTGTTTTCTCCGAGAAC 240
||||||||||||| | ||||||||| ||| |||||||||||||||||| |||| |||| |
Sbjct 181 CGGAGCTCAAACGCA-CCATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAGACC 239
Query 241 TACGCTGCGTCTCCTTGGTGTCTCGAAGAGCTCGTGAA-GATCATGGATTTAGAGAACAA 299
|| ||||||||| ||||||||||||| |||||||| || |||||||||||| || || ||
Sbjct 240 TATGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGT-AACGATCATGGATTTCGAAAAAAA 298
Query 300 GGGTTCCATCACCGTGATGCCCATCTTCTACGGCG 334
|||||||||||||||||||||||||||||||||||
Sbjct 299 GGGTTCCATCACCGTGATGCCCATCTTCTACGGCG 333
> AT1G72930.1 | Symbols: TIR | toll/interleukin-1 receptor-like
| chr1:27439452-27440464 FORWARD LENGTH=872
Length=872
Score = 424 bits (229), Expect = 4e-118
Identities = 303/338 (90%), Gaps = 8/338 (2%)
Strand=Plus/Plus
Query 1 CATAGAGAATCAGAAATCAAAATGTCTTCTGC-TACTGCGACTAAGTACGATGTTTTTCT 59
||| |||||||| ||||||||||||||||| | |||||| |||||||| |||||||| ||
Sbjct 4 CATTGAGAATCAAAAATCAAAATGTCTTCT-CATACTGCAACTAAGTATGATGTTTTCCT 62
Query 60 GAGTTTCAGAGGAC-TCGACACTCG-CAGCACCTTCATCAGCTTTCTCTACAAAGAACTA 117
||||||||||| | | |||||||| || || ||||||||| |||||||||||||||||
Sbjct 63 AAGTTTCAGAGGGCAT-GACACTCGCCA-CAACTTCATCAGTTTTCTCTACAAAGAACTG 120
Query 118 GTTCGAATGAACATTCGAACTTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATT 177
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GTTCGAAGGAGCATTCGAACCTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGTTT 180
Query 178 TCGCCGGAGCTCAAACGAGCCATCGAGGAGTCGAGATTCGCCGTCGTTGTTTTCTCCGAG 237
||||||||||||||| | ||||||||| ||| |||||||||||||||||| |||| |||
Sbjct 181 TCGCCGGAGCTCAAAAGCCCCATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAG 240
Query 238 AACTACGCTGCGTCTCCTTGGTGTCTCGAAGAGCTCGTGAA-GATCATGGATTTAGAGAA 296
||||| ||||||||| ||||||||||||| |||||||| || |||||||||||| || ||
Sbjct 241 AACTATGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGT-AACGATCATGGATTTCGAAAA 299
Query 297 CAAGGGTTCCATCACCGTGATGCCCATCTTCTACGGCG 334
|||||||||||||||||||||||||||||||||||||
Sbjct 300 AAAGGGTTCCATCACCGTGATGCCCATCTTCTACGGCG 337
> AT1G72900.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing
protein | chr1:27432195-27433782 FORWARD LENGTH=1363
Length=1363
Score = 412 bits (223), Expect = 9e-115
Identities = 291/323 (90%), Gaps = 8/323 (2%)
Strand=Plus/Plus
Query 19 AAAATGTCTTCTGCTACTGCGAC---TAAGTACGATGTTTTTCTGAGTTTCAGAGGACTC 75
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 19 AAAATGTCTTCTGCTACTGCGACTTATAACTACGATGTTTTTCTGAGTTTCAGAGGACCC 78
Query 76 GACACTCGCAGCACCTTCATCAGCTTTCTCTACAAAGAACTAGTTCGAATGAACATTCGA 135
||||||||| ||| |||||||||||||||||||||||||| ||| ||| | ||||||||
Sbjct 79 GACACTCGCCGCAAGTTCATCAGCTTTCTCTACAAAGAACTTGTTGGAAGGGACATTCGA 138
Query 136 AC-TTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGATTTCGCCGGAGCTCAAACG 194
|| ||| ||||||||||||||||| ||||||||||||| |||||| |||||||||| ||
Sbjct 139 ACCTTT-AAAGACGACAAAGAGCTAGAGAATGGCCAGATGATTTCTCCGGAGCTCATACT 197
Query 195 AGCCATCGAGGAGTCGAGATTCGCCGTCGTTGTTTTCTCCGAGAACTACGCTGCGTCTCC 254
||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||| |
Sbjct 198 CGCCATCGAGGATTCGAGATTTGCCGTCGTTGTTGTCTCCGTGAACTACGCTGCGTCTTC 257
Query 255 TTGGTGTCTCGAAGAGCTCGTGAAGATCATGGATTT--AGA-GAACAAGGGTTCCATCAC 311
|||||||||||| |||||||| |||||||||||| | ||| ||||||||||||||||||
Sbjct 258 TTGGTGTCTCGATGAGCTCGTAAAGATCATGGATATCCAGAAGAACAAGGGTTCCATCAC 317
Query 312 CGTGATGCCCATCTTCTACGGCG 334
||||||||| |||||||||||||
Sbjct 318 CGTGATGCCTATCTTCTACGGCG 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17493176652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5