BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926660
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyropho... 302 2e-81
> AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl
pyrophosphate isomerase 2 | chr3:602433-604684
REVERSE LENGTH=1036
Length=1036
Score = 302 bits (163), Expect = 2e-81
Identities = 187/198 (94%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 32 TTGATCCGCCTCAGATCTCTCGCTCTTTCGTCTTC---TTCTTCTTTCCGATTTGCACAT 88
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 67 TTGATTCGCCTCAGATCTCTCGCTCTTTCGTCTTCTTTTTCTTCTTTCCGATTTGCCCAT 126
Query 89 CGTCCTCTGTCATCGATTTCACCGATAAAGTTACCGAATTTTCGTGCTTTCTTTGGTACC 148
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 127 CGTCCTCTGTCATCGATTTCACCGAGAAAGTTACCGAATTTTCGTGCTTTCTCTGGTACC 186
Query 149 GCAATGACAGATACTAAAGATGCTGGTAAGGATGCTGTTCAGAGACGTCTCATGTTTGAA 208
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 187 GCTATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAG 246
Query 209 GACGAATGCATTCTTGTT 226
|| |||||||||||||||
Sbjct 247 GATGAATGCATTCTTGTT 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14175505218
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5