BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926666
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72970.1 | Symbols: HTH, EDA17 | Glucose-methanol-choline (G... 3044 0.0
> AT1G72970.1 | Symbols: HTH, EDA17 | Glucose-methanol-choline
(GMC) oxidoreductase family protein | chr1:27452766-27455964
FORWARD LENGTH=2149
Length=2149
Score = 3044 bits (1648), Expect = 0.0
Identities = 1777/1840 (97%), Gaps = 6/1840 (0%)
Strand=Plus/Plus
Query 1 GCTCTTCAGTTTTGGTTTCTGCAGtctccaatggctctcaagctctttctctttgctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 GCTCTTCAGTTTTGGTTTCTGCAGTCTCCAATGGCTCTCAAGCTCTTTCTCTTTGCTCTT 136
Query 61 cttctctgtctcccgacttctctctcATCCACGGCCTCTAAAGGTAAAGAGAAGAAGTCA 120
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 137 CTTCTCTGTCTCCCGACTTCTCTCTCCTCCACTGCCTCTAAAGGTAAAGAGAAGAAGTCG 196
Query 121 AAGTTTAATCCATACAGATACACATTCATCGATAAAGCAAGCACATTCTCATCATCATCC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 197 AAGTTTAATCCATACAGATACACATTCATCGATAAAGCAAGCACATTCTCATCATCTTCC 256
Query 181 TCATCTTCATTTTCATCCAACGGTCAAGATTCAG-CCTACGACTACATAGTCATCGGAGG 239
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 257 TCATCTTCATTTTCATCCAACGGTCAAGATTC-GTCCTACGACTACATAGTCATCGGAGG 315
Query 240 TGGAACCGCAGGGTGTCCTCTCGCCGCAACGCTGTCGCAAAATTTCAGCGTTCTTGTTTT 299
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 316 TGGAACCGCAGGGTGTCCTCTCGCCGCAACGTTGTCGCAGAATTTCAGCGTTCTTGTTTT 375
Query 300 AGAAAGAGGTGGCGTTCCGTTTACAAACGCAAACGTTTCTTTCCTCAGGAATTTTCACAT 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGAGAGAGGTGGCGTTCCGTTTACAAACGCAAACGTTTCTTTCCTCAGGAATTTTCACAT 435
Query 360 CGGACTTGCTGACACGTCAGCTTCTTCCGCGTCACAAGCGTTTGTTTCCACTGACGGCGT 419
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 436 CGGACTTGCTGACATTTCAGCTTCTTCCGCGTCTCAAGCGTTTGTTTCCACTGACGGCGT 495
Query 420 TTACAACGCTCGTGCTCGAGTTCTCGGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTC 479
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TTACAACGCCCGTGCTAGAGTTCTCGGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTC 555
Query 480 CAGAGCCGATGCTGCGTTCGTGAAGCGGGCAGGATGGGATCCGAAGCTGGTGAAGGAGTC 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 556 CAGAGCCGATGCTGCGTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTC 615
Query 540 GTATCCATGGGTGGAGCGAGAAATTGTTCATCAGCCAAAGTTAACGTTATGGCAGAAAGC 599
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 616 GTATCCATGGGTGGAGAGAGAGATTGTTCATCAGCCAAAGTTAACGTTATGGCAGAAAGC 675
Query 600 TCTCAGAGACAGTCTTTTAGAGGTTGGAGTCAGACCTTTCAATGGCTTCACTTACGATCA 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 676 TCTCAGAGACAGTCTTTTAGAGGTTGGAGTCAGACCTTTCAATGGTTTCACTTACGATCA 735
Query 660 CGTCTCCGGAACCAAAATCGGCGGCACAATTTTCGACAGATTCGGCCGTCGTCACACCGC 719
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 736 CGTTTCCGGAACCAAAATCGGCGGTACAATTTTCGACAGATTCGGCCGTCGTCACACCGC 795
Query 720 GGCGGAGCTTCTCGCTTACGCTAATCCTCAGAAGCTTAGAGTCTTGATCTACGCCACTGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 796 GGCGGAGCTTCTCGCTTACGCTAATCCTCAGAAGCTTAGAGTCTTGATCTACGCCACCGT 855
Query 780 GCAAAAAATCGTCTTTGACACTTCGGGAACAAGGCCTAGAGTAACAGGAGTGATATTTAA 839
|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||
Sbjct 856 GCAAAAAATCGTCTTTGACACTTCTGGAACAAGGCCTCGAGTAACAGGAGTAATATTCAA 915
Query 840 AGACGAGAACGGTAATCAACATCAGGCTTTACTCTCGAATAGAAAGGGAAGTGAAGTGAT 899
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 916 AGATGAGAAAGGTAATCAACACCAGGCTTTACTCTCGAATAGAAAGGGAAGTGAAGTGAT 975
Query 900 CTTATCTAGTGGAGCCATTGGGTCACCACAGATGCTGATGTTAAGTGGGATTGGACCTAA 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CTTATCTAGTGGAGCTATTGGGTCACCACAGATGCTGATGTTAAGTGGGATTGGACCTAA 1035
Query 960 GAAGGAGCTTCAGAGGCTGAAGATTCCTGTGGTTTTAGAGAATGAGCATGTAGGGAAAGG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1036 GAAGGAGCTTCAGAGGCTGAAGATTCCTGTGGTTTTAGAGAATGAGCATGTAGGAAAAGG 1095
Query 1020 AATGGCTGATAATCCCATGAACACGATCTTGGTACCTTCAAAGGCGCCTATAGAGCAGTC 1079
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1096 AATGGCTGATAATCCCATGAACACGATCTTGGTGCCTTCAAAGGCGCCTATAGAGCAGTC 1155
Query 1080 ACTCATTCAGACTGTTGGAATTACAAAGATGGGTGTGTATGTTGAAGCCAGTACTGGCTT 1139
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 ACTTATTCAGACTGTTGGAATTACAAAGATGGGTGTGTATGTTGAAGCCAGTACTGGCTT 1215
Query 1140 TGGGCAATCTCCTGAGAGTATTCATACTCACTATGGGATTATGTCAAACAAGAATGAGTT 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1216 TGGGCAATCTCCTGAGAGTATTCATACTCACTATGGGATTATGTCGAACAAGAATGAATT 1275
Query 1200 GTTTTCCACCATTCCTGCAAAGCAGAGAAGACCAGAAGCAACGCAAGCTTACATCACAAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GTTTTCCACCATTCCTGCAAAGCAGAGAAGACCAGAAGCAACGCAAGCTTACATCACAAG 1335
Query 1260 AAACAAATACCAACTTCACGAAGCATTCAATGGAAGTTTCATCTTGGAGAAACTTGCTTA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 AAACAAATACCAACTTCACGAAGCATTCAATGGAAGTTTCATCTTGGAGAAACTTGCTTA 1395
Query 1320 CCCCATCTCTAGAGGGCATTTGAGCTTGGTCAACACCAATGTAGATGACAACCCTTCAGT 1379
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1396 CCCGATCTCTAGAGGGCATTTGAGCTTGGTCAACACAAATGTTGATGACAACCCTTCAGT 1455
Query 1380 CACCTTCAATTACTTCAAACACCCGGTAGATCTCCAACGCTGTGTTGAAGCCATTCGTCT 1439
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1456 CACCTTCAATTACTTTAAACACCCGGTGGATCTCCAACGCTGTGTTGAAGCCATTCGTCT 1515
Query 1440 GGTTTCCAAAGTGGTGACATCTAAGCGCTTCTTAAACTACACACAGTGCGATAAGCAAAA 1499
||||||||||||||||| ||||| || |||||||||||||| ||||| || ||||||||
Sbjct 1516 TGTTTCCAAAGTGGTGACGTCTAACCGTTTCTTAAACTACACGCAGTGTGACAAGCAAAA 1575
Query 1500 CGTCCACAAGATGCTTAGCTTAAGTGTTAAGGCAAACATCAATCTACGGCCAAAGCAACT 1559
||| |||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 1576 CGTACACAAGATGCTTAGCTTAAGCGTCAAGGCAAACATCAATCTAAGGCCAAAGCAACT 1635
Query 1560 GAACGATACCAAATCAATGGCTCAGTTCTGCAAAGACACTGTTGTCACAATCTGGCACTA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 GAACGATACCAAATCAATGGCTCAGTTCTGCAAAGACACTGTTGTCACAATCTGGCACTA 1695
Query 1620 CCATGGTGGATGTCTTGTGGGTAAAGTTGTGAGCCCTAACCGCAAAGTTCTTGGTGTCGA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 CCATGGTGGATGTCTTGTGGGTAAAGTTGTGAGCCCTAACCGCAAAGTTCTTGGTGTCGA 1755
Query 1680 CAGGCTGAGAGTTATTGATGGTTCAACCTTTGACGAGTCTCCAGGAACCAACCCTCAAGC 1739
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1756 CAGGCTCAGAGTTATTGATGGTTCAACGTTTGACGAGTCTCCAGGAACCAACCCGCAAGC 1815
Query 1740 TACGATGATGATGATGGGAAGATACATGGGAGTCAAGATTCTTAGGAAGAGACTTGGAGA 1799
||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1816 TACTATGATGATGATGGGAAGATACATGGGAGTCAAGATTCTTCGGGAGAGACTTGGAAA 1875
Query 1800 CAAGGCTGGTGTTTAGTTTGC---T-GAGCTTTTATCGTA 1835
||| ||||||||||||||||| | |||||||||| |||
Sbjct 1876 CAAAGCTGGTGTTTAGTTTGCAGATTGAGCTTTTATGGTA 1915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5