BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926669
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73000.1 | Symbols: PYL3, RCAR13 | PYR1-like 3 | chr1:274629... 1013 0.0
> AT1G73000.1 | Symbols: PYL3, RCAR13 | PYR1-like 3 | chr1:27462995-27463877
FORWARD LENGTH=883
Length=883
Score = 1013 bits (548), Expect = 0.0
Identities = 634/674 (94%), Gaps = 12/674 (2%)
Strand=Plus/Plus
Query 5 AAAGTACACCCAAAACTATGAACCTTAATCTTGCTCCAATCAATAATtcatcatcatcat 64
|||||||||||||||| ||| ||||||||||||||| || || ||||||||||||
Sbjct 81 AAAGTACACCCAAAACCATG------AATCTTGCTCCAATCCATGATCCATCATCATCAT 134
Query 65 catcaacaacaacatcatcgtcaacaCCATACGGATTAACGAAGGAAGAGTTCTCAACAC 124
|| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 135 CAACAACAACAACATCATCGTCAACACCATACGGATTAACAAAGGACGAGTTCTCAACAC 194
Query 125 TAGACTCCATCATCCGAACACACCACACGTTCCCAAGATCGCCAAACACGTGCACATCTC 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 195 TAGACTCCATCATCCGAACACACCACACGTTCCCAAGATCGCCAAACACGTGCACATCAC 254
Query 185 TCATAGCACACCGCGTAGACGCACCGGCACATGCCATATGGAGATTCGTCCGAGACTTCG 244
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 255 TCATAGCACACCGTGTAGACGCACCGGCACATGCCATATGGAGATTCGTCCGCGACTTCG 314
Query 245 CGAATCCGAACAAATACAAACACTTCATCAAGAGTTGCACCATCAGAGGTGACGGTAACG 304
| ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 315 CCAATCCAAACAAATACAAACACTTCATCAAGAGTTGCACCATCAGAGTTAACGGTAACG 374
Query 305 GCGTCAAAGAGATTAAAGTTGGGACAATAAGGGAAGTTAGCGTGGTCTCTGGTCTTCCAG 364
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 375 GCATCAAAGAGATTAAAGTTGGGACTATAAGGGAAGTTAGCGTGGTCTCTGGTCTTCCAG 434
Query 365 CGTCAACAAGCGTTGAGATACTCGAAGCTCTTGACGAAGAGAAACGGATCTTGAGTTTTC 424
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 435 CGTCAACAAGCGTTGAGATACTCGAAGTTCTTGACGAAGAGAAACGAATCTTGAGTTTTC 494
Query 425 GTGTTCTTGGAGGAGAACACCGGTTAAATAATTACCGGTCGGTTACATCGGTTAACGAGT 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 495 GTGTTCTTGGAGGAGAACACCGGTTAAATAATTACCGGTCGGTTACATCGGTCAACGAGT 554
Query 485 TCGTCGTCTTGGAAAAGGATAAGAAGAA-AG--TGTATAGTGTGGTTTTGGAGTCTTATG 541
|||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 555 TCGTCGTCTTGGAAAAGGATAAGAAGAAGAGAGTGTATAGTGTGGTATTGGAGTCTTACA 614
Query 542 TTGTTGATATACCTA-AAGGTAACACGGAAGAAGATACGAGGATGTTTGTGGATACTGTC 600
||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 615 TTGTTGATATACC-ACAAGGTAACACGGAAGAAGATACAAGGATGTTTGTGGATACGGTC 673
Query 601 GTTAAATCGAATCTACAGAATCTCGCCGTCGTTTCCACGGCTTCTCCGACTTGAAAGTTT 660
||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 674 GTTAAGTCGAATCTACAGAATCTCGCCGTCATTTCCACGGCTTCTCCGACCTGAAAGTGT 733
Query 661 TTTGTGTTGAAAAT 674
|| |||||||||||
Sbjct 734 TT-GTGTTGAAAAT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5