BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926675
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73060.1 | Symbols: LPA3 | Low PSII Accumulation 3 | chr1:2... 2106 0.0
> AT1G73060.1 | Symbols: LPA3 | Low PSII Accumulation 3 | chr1:27478970-27481448
FORWARD LENGTH=1324
Length=1324
Score = 2106 bits (1140), Expect = 0.0
Identities = 1205/1237 (97%), Gaps = 1/1237 (0%)
Strand=Plus/Plus
Query 21 ATGGCGATGGCGATGTTACCGGCTCTCTTCTCTTCTCCTTCGATTCTAACCAGCAGAATC 80
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 64 ATGGCGATTGCGATGTTACCGGCGCTCTTCTCTTCTCCTTCGATTCTAACCAGCAGAATC 123
Query 81 AGATGCGGAGCCACAGCTAACAGCGGCGGCGCACTCTCATCTACTTCTTCTGACTCCGAT 140
|||||||||||||| || ||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 124 AGATGCGGAGCCACCGCAAACAGCGGCGGCGCAATCTCATCTACTTCTTCTAATTCCGAT 183
Query 141 CTTAGGAGAGGTGTTCCCTTGTATAAGCCCAAATCATACGAGGTTCTAGCCACTGACGCC 200
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCTAGGAGAGGTGTTCCCTTGTATAAGCCCAAATCATACGAGGTTCTAGCCACTGACGCC 243
Query 201 GCCAATTCTCTTGCTTTCGCTCTCCAGGATTCAAAATCTCGTTTGGAAATTGATTTTCCA 260
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 244 GCCAATTCTCTAGCTTTCGCTCTCCAGGATTCAAAATCTCGTTTGGAAATCGATTTTCCA 303
Query 261 CCTTTACCCAGTAGCATTTCTTCTTACAAGGGTTCGTCAGACGACTTTATTGATGCTAAT 320
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 304 CCTTTACCCAGTAGCATTTCTTCTTACAAGGGTTCTTCAGACGACTTTATTGATGCTAAT 363
Query 321 ATACAACTGGCCGTGACTGTTGTTCGCAAACTTCAGGAGAAAATTGAGACAAGAGCTTGC 380
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 364 ATACAACTGGCCGTGACTGTTGTTCGCAAACTTCAGGAGAAAATCGAGACCAGAGCATGC 423
Query 381 ATTGTTTTTCCTGACAAGCCTGAGAAGCGCAGGGCTTCGCAACGCTTCAAAGCGGCATTT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATTGTTTTTCCTGACAAGCCTGAGAAGCGCAGGGCTTCGCAACGCTTCAAAGCGGCATTT 483
Query 441 GATTCGGTTGATGGCATAAGTATTGGCTCTCTAGATGATATACCTGGTAGTTCTGTCACC 500
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 484 GATTCGGTTGATGGCATAAGTATTGGCTCTCTAGATGATATACCTGGTACTTCTGTCACC 543
Query 501 AATTTCTTCAGGTCCATAAGGAGTACCCTGGACTTTGATTTTGAAGATGAAAACGAAGGA 560
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AATTTCTTTAGGTCCATAAGGAGTACCCTGGACTTTGATTTTGAAGATGAAAACGAAGGA 603
Query 561 ACTTGGGAGCCCAAGGAGCCTCCGACCCTTTATATATTTATCAATTGCAGCACTCGGGAA 620
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 604 ACTTGGGAGCCCAAGGAGCCACCGACCCTTTATATATTTATCAATTGCAGCACTCGGGAA 663
Query 621 CTCTCTTTCATAGAGAAGTTTGTGGAAACCTTTGCCAGTTCAACCCCAGCTCTTCTGTTC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTCTCTTTCATAGAGAAGTTTGTGGAAACCTTTGCCAGTTCAACCCCAGCTCTTCTGTTC 723
Query 681 AATCTTGAGCTAGATACTTTGCGTGCTGACCTAGGGCTTCTTGGCTTCCCCCCTAAAGAT 740
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 724 AATCTTGAGCTAGATACTTTGCGTGCTGACCTAGGGCTTCTTGGCTTTCCCCCTAAAGAT 783
Query 741 CTGCACTACCGGTTTCTTTCTCAATTTATTCCCGTCTTTTATATCCGAACCAGAGAGTAT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CTGCACTACCGGTTTCTTTCTCAATTTATTCCCGTCTTTTATATCCGAACCAGAGAGTAT 843
Query 801 TCAAAGACAGTGGCAGTGGCACCATTTGTGTTAAACTACAACGGAGCACTTTTCCGACAA 860
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 844 TCAAAGACAGTGGCAGTGGCACCATTTGTGTTGAACTACAACGGAGCACTTTTTCGACAA 903
Query 861 TATCCTGGGCCATGGCAGGTGATGCTTAAGCAAACTGATGGTTCATATGCGTGTGTTGCA 920
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 904 TATCCTGGGCCATGGCAGGTGATGCTTAAGCAAACTGATGGTTCATTTGCGTGTGTTGCA 963
Query 921 GAAAGCCCTACTCGTTTCACGCTGGGTGAAACGAAGGAAGAGCTGTTGCAGGTTCTGGGA 980
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 964 GAAAGCCCTACTCGTTTCACGCTGGGTGAAACGAAGGAAGAGCTGTTACAGGTTCTGGGA 1023
Query 981 CTACAAGAAGAGAAAGGAAGCTCACTCGAGTTCCTGCGCAGGGGATACAAGTCGGCAACT 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CTACAAGAAGAGAAAGGAAGCTCACTCGAGTTCCTGCGCAGGGGATACAAGTCGGCAACT 1083
Query 1041 TGGTGGGAAGAGGATGTGGAGCTTGAGGCATCATCTAATTGGCGTAACTGAACGATGGCC 1100
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1084 TGGTGGGAAGAGGATGTGGAGCTCGAGGCATCATCTAATTGGCGTAACTGAACGATGGCC 1143
Query 1101 AAGTCATGGATTCACACTTTTGGTATGTTTGTTAAGTCCCTCAAGATCGAGATATTTACA 1160
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 1144 AAGTCATGGATTCACACTTTTGGTAAGTTTGTTAAGTCTCTCAAGATTGAGATATTTACA 1203
Query 1161 CTTGTATATGTGCAAAGTTGGTAGAGAGAGTTTGGGAGATGTTAATGGGAATGATAAAGG 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1204 CTTGTATATGTGCAAAGTTGGTAGAGAGAGTTTGGGAGATGTTAATGGGAATGATTAAGG 1263
Query 1221 ATAGTTTGAAAATGATGTCTATATA-AACTCAGTCCA 1256
||||||| || ||| | |||||||| |||||||||||
Sbjct 1264 ATAGTTTCAATATGTTTTCTATATATAACTCAGTCCA 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5