BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926679
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73100.1 | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | ch... 3221 0.0
> AT1G73100.1 | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 |
chr1:27491184-27494182 FORWARD LENGTH=2424
Length=2424
Score = 3221 bits (1744), Expect = 0.0
Identities = 1936/2030 (95%), Gaps = 8/2030 (0%)
Strand=Plus/Plus
Query 9 AGGATTTTAGCAATGGAAGGAGTTCCTGGGGTCAATACTGTTCCGAATCCTAACCATTAT 68
|||| |||||||||| ||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 200 AGGAGTTTAGCAATGCAAGGAGTTCCTGGATTTAATACTGTTCCAAATCCTAACCATTAT 259
Query 69 GACAAGTCAATAGTGTTAGATGTAAAACCGCTGCGAAGTTTGAAACCTGTTTTTCCAAAT 128
||||| ||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 260 GACAAATCAATAGTGTTAGATATTAAACCGTTGCGAAGTTTGAAACCTGTTTTTCCAAAT 319
Query 129 GGTAATCAAGGTCCACCTTTTGTTGGTTGTCCACCTTTTGGTCCTTCTTCATCTGGGTCT 188
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 320 GGTAATCAAGGTCCACCTTTTGTTGGTTGTCCACCTTTTGGTCCTTCCTCATCTGAGTAT 379
Query 189 TCTCCTTTCTTCCCATTTGGAACACAACAACCAACGCAGGATACTCCAGATCTCAACCAA 248
||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 380 TCTTCTTTCTTCCCATTTGGAGCACAACAACCAACGCATGATACTCCAGATCTCAACCAA 439
Query 249 ACTCAGGACACGCCTACTCCATCATTTGTTCCACCTCTTCGATCGTATAGAACACCTACT 308
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ACTCAGAACACGCCTATTCCATCATTTGTTCCACCTCTTCGATCGTATAGAACACCTACT 499
Query 309 GAAACAAATGGCCCCAGCAGCTCTAGTGGAACTAAACGAGGAGTTGGTCGACCTAAGGGT 368
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 500 AAAACAAATGGCCCCAGCAGCTCCAGTGGAACTAAAAGAGGTGTTGGTCGACCTAAGGGA 559
Query 369 CCTAGTAGTGTGAAGAAAAAAGAGAAGAAGACTGTGGCCAATGAGGCTAATTTAGATGTT 428
||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 560 ACTACTAGTGTGAAGAAAAAAGAGAAGAAGACTGTGGCCAATGAGCCTAACTTAGATGTT 619
Query 429 CAGGTAGTGAAAAGATTCAGTTCAGATTTTGACAGTGGGATCAGTCCAGCAGAGCGAGAA 488
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 620 CAGGTAGTGAAAAAATTCAGTTCAGATTTTGACAGTGGGATCAGTGCAGCAGAGCGAGAA 679
Query 489 GATGGAAATGCGTACTTAGTAAGTAGCGTATTGATGCGTTATGATGCAGTTAGGAGGCGG 548
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 680 GATGGAAATGCGTACTTAGTAAGTAGTGTATTGATGCGTTTTGATGCAGTTAGGAGGCGG 739
Query 549 CTCAGCCAAGTAGAATTTGCAAAGGCCGCTACTTCTAAAGCAGCAGGTACTCTGATGAGC 608
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 740 CTCAGCCAAGTAGAATTCACAAAGTCCGCTACTTCTAAAGCAGCAGGTACTCTGATGAGC 799
Query 609 AATGGGGTGCGGACAAACATGAAGAAGAGAGTTGGGACGGTTCCTGGAATTGAGGTTGGA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 AATGGGGTGCGGACAAACATGAAGAAGAGAGTTGGGACGGTTCCTGGAATTGAGGTTGGA 859
Query 669 GATATCTTCTTTTCCCGGATAGAGATGTGTTTAGTGGGTCTTCACATGCAGACTATGGCT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GATATCTTCTTTTCCCGGATAGAGATGTGTTTAGTGGGTCTTCACATGCAGACTATGGCT 919
Query 729 GGCATTGACTATATAACTAGTAAAGCCGGTTCAGATGAAGAGCCTTTAGCAACTAGCATT 788
|||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 920 GGCATTGACTATATAATTAGTAAGGCCGGTTCAGATGAAGAGTCTTTAGCAACTAGCATT 979
Query 789 GTTGCATCTGGACGTTATGAAGGTGAAGCTCAGGATCCTGAGTCATTAATTTATAGTGGA 848
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 980 GTTTCATCTGGACGTTATGAAGGTGAAGCTCAGGATCCTGAGTCATTAATTTACAGTGGA 1039
Query 849 CAAGGCGGCAATGCAGACAAGAACGGACAAGCATCTGATCAGAAGCTTGAAAGGGGTAAT 908
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1040 CAAGGCGGCAATGCAGACAAGAACAGACAAGCATCTGATCAGAAGCTTGAAAGGGGTAAT 1099
Query 909 CTAGCACTAGAGAAAAGCTTGAGGAAGGGTAATGGAGTAAGAGTCATAAGAGGGGAGGAA 968
|||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1100 CTAGCATTAGAGAATAGCTTGAGGAAGGGAAATGGAGTAAGAGTCGTAAGAGGGGAGGAG 1159
Query 969 GATGCAGCTACCAAAACAGGAAAGATCTATATCTATGATGGGCTTTATTCGATCTCAGAG 1028
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GATGCAGCTTCGAAAACAGGAAAGATCTATATCTATGATGGGCTTTATTCGATCTCAGAG 1219
Query 1029 TCATGGGTAGAGAAAGGGAAATCTGGTTGCAACACCTTTAAATATAAATTGGTGAGACTA 1088
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1220 TCATGGGTAGAGAAAGGGAAATCTGGTTGCAACACCTTTAAATATAAATTGGTGAGACAA 1279
Query 1089 CCTGGTCAACCACCTGCTTTTGGCGTTTGGAAATCTGTTCAGAAGTGGAAGGAAGGTTTG 1148
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1280 CCTGGTCAACCACCTGCGTTTGGCTTTTGGAAATCTGTTCAGAAGTGGAAGGAAGGTTTG 1339
Query 1149 ACTACAAGACCAGGCCTGATCCTTCCAGATATCACTTCAGGAGCTGAAAGTAAACCTGTT 1208
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1340 ACTACAAGACCAGGCCTGATCCTTCCAGATCTCACCTCAGGAGCTGAAAGTAAACCTGTT 1399
Query 1209 TCACTTGTGAACGATATTGATGAGGAGAAGGGGCCTGCTTATTTTACCTATATCTCCTCT 1268
||||||||||| ||| |||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1400 TCACTTGTGAATGATGTTGATGAGGATAAAGGGCCTGCTTATTTTACCTATACCTCCTCT 1459
Query 1269 CTGAAATACTCAGATTCCTTTAAACTAACTCAGCCCGCAATTGGTTGTTCCTGCAGTGGC 1328
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1460 CTGAAATACTCAGAGACCTTTAAACTAACTCAGCCTGTAATTGGTTGTTCCTGCAGTGGT 1519
Query 1329 TCATGTGCACCAGGAAATCTTAACTGCTCTTGTATCAGAAAAAATGATGGTGATCTCCCT 1388
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 TCATGTTCACCAGGAAATCATAACTGCTCTTGTATCAGAAAAAATGATGGTGATCTCCCT 1579
Query 1389 TACCTTAATGGGGTTATGCTCGTTTCCCGGAGGCC-GATTATATATGAATGTGGCCCAAC 1447
||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1580 TACCTTAATGGGGTTATACTCGTTTCCCGGAGGCCTG-TGATATATGAATGTGGCCCAAC 1638
Query 1448 GTGTCCATGTCATGCCAGTTGCAAAAACAAAGTGATTCAGACAGGACTGAAATCGCGTCT 1507
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1639 GTGTCCTTGTCATGCCAGTTGCAAAAACAGAGTGATTCAGACAGGACTGAAATCCCGCCT 1698
Query 1508 GGAAGTGTTTAAGACAGGAAATCGCGGTTGGGGTTTACGTTCATGGGATTCCATACGTGC 1567
|||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||
Sbjct 1699 GGAAGTGTTTAAGACAAGAAACCGCGGTTGGGGTTTACGTTCGTGGGATTCCTTACGTGC 1758
Query 1568 TGGTTCTTTCATATGTGAATATGCTGGTGAAGTCAAAGACAAAGGCAACCTTAGAGGAAA 1627
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1759 TGGTTCTTTCATATGTGAATATGCTGGTGAAGTCAAAGACAATGGCAACCTTAGAGGAAA 1818
Query 1628 CCAAGAAGAGGATGAGTATGTCTTCGACACATCGCGTGTTTTTAACTCGTTTAAGTGGAA 1687
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1819 CCAAGAAGAGGATGCGTATGTCTTTGACACATCGCGTGTTTTTAACTCGTTTAAGTGGAA 1878
Query 1688 TTATGAGCCTGAACTTGTAGATGAAGACCCTTCAGA-TGAAGTGCCCGAGGAGTTTAATC 1746
|||||||||||| ||||||||||||||||||||| | |||||| ||||| ||||||||||
Sbjct 1879 TTATGAGCCTGAGCTTGTAGATGAAGACCCTTCA-ACTGAAGTTCCCGAAGAGTTTAATC 1937
Query 1747 TCCCATCACCACTCCTAATCAGTGCCAAGAAATTTGGCAATGTAGCTCGGTTCATGAACC 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 TCCCATCACCACTCCTAATCAGTGCCAAGAAATTTGGCAATGTAGCTCGGTTCATGAACC 1997
Query 1807 ATAGTTGCTCTCCCAACGTTTTTTGGCAGCCAGTTATTTGTGAAGGAAACGGTGAATCGG 1866
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1998 ATAGTTGCTCTCCTAACGTTTTTTGGCAGCCAGTTATTCGTGAAGGAAACGGTGAATCAG 2057
Query 1867 TTATCCATATTGCTTTCTTTGCCATGCGTCACATCCCTCCTATGGCAGAATTGACATATG 1926
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2058 TTATCCACATTGCTTTCTTTGCCATGCGTCATATCCCTCCTATGGCAGAATTGACATATG 2117
Query 1927 ATTATGG-AGTTTCTCCTACATCCGAGGCCAGGGATG-GTAGCCTTTTACATGGACAGAG 1984
||||||| | |||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 2118 ATTATGGGA-TTTCTCCTACATCCGAGGCCAGAGATGAG-AGCCTTTTACATGGACAGAG 2175
Query 1985 GACATGTCTCTGTGGATCTGAGCAATGTCGTGGTTCATTCGGATGATCTG 2034
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 GACATGTCTCTGTGGATCTGAGCAATGTCGTGGTTCATTCGGATGATCTG 2225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101605903080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5