BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926692
Length=2381
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73200.1 | Symbols: | Putative integral membrane protein co... 3648 0.0
> AT1G73200.1 | Symbols: | Putative integral membrane protein
conserved region (DUF2404) | chr1:27523454-27526718 REVERSE
LENGTH=2485
Length=2485
Score = 3648 bits (1975), Expect = 0.0
Identities = 2224/2346 (95%), Gaps = 10/2346 (0%)
Strand=Plus/Plus
Query 20 GATGGTTTCGTTTGCGGGTTTCGCGTTCTTATCTGGAATTCTACTGGGGATTCTTGCGAT 79
||||||||||||| |||||||||| ||| ||| |||||||||||| ||||||||||||||
Sbjct 145 GATGGTTTCGTTTACGGGTTTCGCTTTCGTATTTGGAATTCTACTTGGGATTCTTGCGAT 204
Query 80 CGTTACGGCGGAAGTTATAGGGTTTTTGTATATTCTGAAGCGATTGAATCGGAAGAGAAA 139
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 205 CGTTACGGCGGAAGTTGTAGGGTTTTTGTATCTTCTGAAGCGATTGAATCGGAAAAGAGA 264
Query 140 TCATCAAGAATCGAATTCGAGTTCTGATTCAAACTTCAAGAATTTTGATCCTCGCCAGTC 199
|| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 265 TCGTCAGGAATCGAATTCGAGTTCTGATCCAAACTTCAAGAGTTTTGATCCTCGCCAATC 324
Query 200 CATTGATTTTAGTCTCAACAAACAGGGAGTGATCTGGATTTTGGAATTAGATGAAAATGT 259
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 325 CATTGATTTTAGTCTCAACAAACAGGGAGTGATCTGGATATTGGAATTAGATGAAAATGT 384
Query 260 AAAAGATTGGATGAAGGAGAAATTACCAACAGAGCAAAAGAAGAAGAGAGTTGATCTCTT 319
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 385 AAAAGATTGGATGAAGGAGAAATTACCAAAAGAGCAAAAGAAGAAGAGAGTAGATCTCTT 444
Query 320 GGAGGTACATCCAGTTAGGAGATTTGCTCGTATCAAAGACCATAAGCTCTTCTTGTCAGA 379
|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||
Sbjct 445 GGAGGTACATCCAGTTAGGAGATTTGCTCGCATCAAAGATCATAAGCTCATCTTGTCTGA 504
Query 380 TTCATTAGATGGCACTCAGACTCCTATTACTTTGAAAGGTTGCTTTGTTGACGCTGTTTC 439
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TTCATTAGATGGCCCTCAGACTCCTATTACTTTGAAAGGTTGCTTTGTTGACGCTGTTTC 564
Query 440 AGGCTCTGGACCGACTAGGAAATGGGCTAAAAGATTTCCGATACAAGTAGAAAGCAAAAC 499
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 565 AGGCTCTGGACCAACAAGGAAATGGGCTAAAAGATTTCCTATACAAGTAGAAAGCAAAAC 624
Query 500 TTCGGTCTTGTACAAGGGAAACCGAGTGTTTTACATTTTCTTAGAGACTTCTTGGGAGAA 559
||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 625 TTCTGTCTTGTATAAAGGAAACAGAGTGTTTTACATTTTCTTAGAGACTTCTTGGGAGAA 684
Query 560 GGAGTCATGGTGTAAAGCTCTTCGTCTTGCTGCTTGCGAGAATCAGGAAAGGTTTATTTG 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GGAGTCATGGTGTAAAGCTCTTCGTCTTGCTGCTTGCGAGAATCAGGAAAGGTTTATTTG 744
Query 620 GTCCACCAAATTGAAAGAGGATTTCCGTAACTATCTGGCTTCCCTTAATGCTGCCTATCC 679
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 745 GTCCACCAAATTGAAAGAAGATTTCCGGAACTATCTGGCTTCCCTTAATGCTGCCTATCC 804
Query 680 TTCTTTTATGAAACCATCAGCTGGGTTTAGTTTTGAGTCATTGGACAAGGGGCTTAAAGC 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TTCTTTTATGAAACCATCAGCTGGGTTTAGTTTTGAGTCATTGGACAAGGGGCTTAAAGC 864
Query 740 GGATGGTCCTTCATCAAAGGTTCGTCTT-TTCTGGAAGAAGTTTTCAAAAAAGTGCTCAA 798
|||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||
Sbjct 865 AGATGGTCCTTCATCAAAGGTTCGT-TTGATCTGGAAGAAATTTTCGAAAAAGTGCTCAA 923
Query 799 CTAAAGTGAATTTGCCCCCGTCTATACGTGAAGACAAGAAAACTTCAACCCGTTCTTACC 858
||||||||||||| |||||||| || ||||| |||||||| |||||| ||||||||||||
Sbjct 924 CTAAAGTGAATTTTCCCCCGTCGATTCGTGACGACAAGAAGACTTCATCCCGTTCTTACC 983
Query 859 AAGATTCACAGTCTACTGGTAGCTCTGGAAGGAGTACCCCAGCAAGGAAGATGCAAGATA 918
|||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct 984 AAGATTCACAATCTACTGGTAGCTCTGGAAAGAGTACCTCAGCAAGGAGGATGCAAGATA 1043
Query 919 ACATCCCTGAGGAAACCGATGTCCAAGTTTTCTCACGTACCTGGAGCCATAGCAGTCATG 978
||||||| |||||||| |||||||||||| |||||||| | |||||||||||||||||||
Sbjct 1044 ACATCCCGGAGGAAACTGATGTCCAAGTTATCTCACGTTCTTGGAGCCATAGCAGTCATG 1103
Query 979 CATCAGATGTTGATTCAGAAGACAAGTCTTTTGATGAAGGAACATTGGCATTGAACGTAC 1038
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CATCAGATGTAGATTCAGAAGACAAGTCTTTTGATGAAGGAACATTGGCATTGAACGTAG 1163
Query 1039 TAATT-TCTCGGCTGTTTTTTGATGTCAAACAGAACACAGTGCTGAAGAATTTCA-TGCG 1096
| ||| |||||||||||||||||||| |||||||||||||| ||||||||||| | ||||
Sbjct 1164 T-ATTATCTCGGCTGTTTTTTGATGTTAAACAGAACACAGTACTGAAGAATTT-AGTGCG 1221
Query 1097 CGAACGAATCCAGCGGATAATGTCCAACATGAGAGTTCCCAGCTACATAGGTGATTTAAT 1156
|||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 1222 CGAACGAATCCAGCGGATAATGTCCAACATGAGAATTCCCAGCTACATAGGCGAATTAAT 1281
Query 1157 CTGCTGTGATGTGGACATTGGAAATCTCCCGCCTTATATACACGGTACAAGAATTCTTCC 1216
||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1282 CTGCTGTGACGTAGACATTGGAAATCTCCCGCCTTACATACACGGTACGAGAATTCTTCC 1341
Query 1217 AATGGAGATGAATGGTGTGTGGGCATTCGAAATAGATATTGAATACACTGGTGGTGCGGG 1276
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1342 AATGGAGATGAATGGTGTGTGGGCGTTCGAAATAGATATTGAATACACTGGTGGTGCGGG 1401
Query 1277 ACTTGAAGTTGAAACTCGGGTTGATGCGCGAGAAGAAGATCTGGAGAAAGGCATAGCTGA 1336
||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||
Sbjct 1402 ACTTGAAGTTGAAACTCGGGTTGATGCTCGAGAGGAAGATTTGCAGAAAGGCATAGCTGA 1461
Query 1337 GGGAAAGTTGCAGCCAAATTCTGCTGGGGATGTTCCACCAGATCTCCTTGAAGATCTTGT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1462 GGGAAAGTTGCAGCCAAATTCTGCTGGGGATGTTCCACCAGATCTCCTTGAAGGTCTTGC 1521
Query 1397 AGATTTTGAAAAGCAATTAAATGTCCCCGGTGGAACTGCTGATGCACAAGATGTGAAAAG 1456
|||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 1522 AGATTTTGAAAAGCAATTAAATGTTCCCGGAGGAACTGTTGATGCACAAGATGTGAAAAG 1581
Query 1457 TGGTCGAACCGATAAAGCTGATGAATCTAAGGGTCCAAAAGGTACAAAAGCAGGTTCGAG 1516
|||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1582 TGGTGGAACTGATAAAGCTGATGAATCGAAGGGTCCAAAAGGTACAAAAACAGGTTCGAG 1641
Query 1517 CAATGGATCCAAGTGGAAGTCTATTCTGAAGAACATCGCTGAACAAGTTTCCCAGGTCCC 1576
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1642 CAATGGATCCAAGTGGAAGTCTATGCTGAAGAACATCGTTGAACAAGTTTCCCAGGTCCC 1701
Query 1577 AATTACTTTGTCTATAGGGGTGTCTTCGCTTCGAGGGACACTGTGTGTACACATGAAGCC 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 AATTACTTTGTCTATAGGGGTGTCTTCGCTTCGAGGGACACTGTGTGTACACATGAAGCC 1761
Query 1637 GCCTCCATCTGATCAACTGTGGTTTGGCTTCACAAGCATGCCCGACATTGAATTCAACCT 1696
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1762 GCCTCCATCTGATCAACTGTGGTTTGGCTTCACAAGCATGCCTGATATTGAATTCAACCT 1821
Query 1697 TGTCTCTTCTGTTGGTGAACACAAAATCACAAACAGCCATGTTGCTATGTTTTTGGTCAA 1756
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1822 TGTCTCTTCTGTTGGTGAACACAAAATCACAAACAGCCATGTTGCTATGTTCTTGGTCAA 1881
Query 1757 CCGGTTTAAGACGTCGATACGAGACGTCATGGTGCTCCCCAATTGTGAAAGCATTACCAT 1816
|||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1882 CCGGTTCAAGACGGCGATACGAGACGTCATGGTGCTCCCCAATTGTGAAAGCGTTACCAT 1941
Query 1817 TCCTTGGATGACAGCTGAAAGGGATGATTGGGTCGAACGCAATGTAGCTCCATTCATGTG 1876
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1942 TCCTTGGATGACAGCTGAAAAGGATGATTGGGTCGAACGCAATGTCGCTCCATTCATGTG 2001
Query 1877 GCTGAATCAAGACACGACCAGTGATCACGACAGCTTTG-AAGCTGCAGAAGCGAAATCTA 1935
||||||||||||| | |||||||||| ||| | |||| |||||||||||||||||||||
Sbjct 2002 GCTGAATCAAGACTCCACCAGTGATCGCGAAAA-TTTGGAAGCTGCAGAAGCGAAATCTA 2060
Query 1936 AAGCTGACAAACCACCAACTTCTGAACAAATGCAGAAAACTGTCATCGTCCCGCAGAAGC 1995
|||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2061 AAGCTGACAAGCCACCGACTTCTGAACAAATGCAGAAAACTGTCAACATCCCGCAGAAGC 2120
Query 1996 CTAGAATTGAGGAAGAATCTGTGTCTGCGGACACTGCACCATCAGCTAATTCCACAGGTC 2055
||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||
Sbjct 2121 CTAGAATTGAGGAAGAATCTGTGTCGGCTGACACTGCACCATCAGCTAATTCCATAGCTC 2180
Query 2056 TTATAGTAGAGAGTGACAAATCCTTGGAAGAACTCAAGACCCCGCTGCTGGAAAGCAGCG 2115
| |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 2181 TCCTAGTAGAGAGTGACAAATCCTTAGAAGAACTCAAGACTCCACTGCTGGAAAGCAGCG 2240
Query 2116 AAAAGCATGATACGATAGCGCGAGGAGGCAGTGCGGGAGATATTAAT-CCGGGTATTGTT 2174
||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||| |
Sbjct 2241 AAAAGCATGATACAATAGCGAGAGGAGGCAGTGCGGGAGATAT-AATTCCGGGTATTGGT 2299
Query 2175 CAATCACCGTCTAGGTCGACTGTTTCGAGCGAAGAGGATGATTCAAATTCGAAAGGAAAG 2234
||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 2300 CAATCACCGTCTATGTCGACTGTTTCGGGTGAAGAGGATGATTCAAATTCAAAAGGAAAG 2359
Query 2235 AAAATGGGGACAGCAAAGGCGAGGATGTTCGATTTTAGGAAGAAAGTGGGAGAGAAGTTT 2294
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2360 AAAATGGGGGCAGCAAAGGCGAGGATGTTCGATTTTAGGAAGAAAGTGGGAGAGAAGTTT 2419
Query 2295 GAAGAGAAGAAACGTCACGTTGAGGAAAAAAGTAGACAAATTGTTGAAAAGATGAGAGGA 2354
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2420 GAAGAGAAGAAACGTCACGTTGAGGAAAAAAGTAGACAGATTGTTGAAAAGATGAGAGGA 2479
Query 2355 CCTTGA 2360
||||||
Sbjct 2480 CCTTGA 2485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118222283475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5