BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926695
Length=205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73230.1 | Symbols: | Nascent polypeptide-associated comple... 315 1e-85
> AT1G73230.1 | Symbols: | Nascent polypeptide-associated complex
NAC | chr1:27540228-27541944 REVERSE LENGTH=901
Length=901
Score = 315 bits (170), Expect = 1e-85
Identities = 196/208 (94%), Gaps = 3/208 (1%)
Strand=Plus/Plus
Query 1 CTGCAAAACCCATCATAAAAATGTTTGTCGCTCGACCTTTTTTGAGCACTGTCAGATTCT 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 655 CTGCAAAACCCATCATAAAAATGTTTGTCGCTCGACCTCTTCTGAGCACTGTCAGATTCT 714
Query 61 TGTTTTCTCTAATGCTTGCGAACAGAAAGACTTGGTTTTATTATCACTTGATGCTTTTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGTTTTCTCTAATGCTTGCGAACAGAAAGACTTGGTTTTATTATCACTTGATGCTTTTTG 774
Query 121 GTCCGAACAACAATTTTCCATTTATTAAGGCTAGATCGCTTTTTGTTTATCACCTGTTCA 180
||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 775 GTCCGAACAGCAATTTTCCTTTTATTAAGGTTAGATCGCTTTTTGTTTACCACCTGTTCA 834
Query 181 AATGAGTGCTA-TGT-TC-TGTCTCTTC 205
||||||| ||| | | || |||| ||||
Sbjct 835 AATGAGTACTACTATGTCCTGTCGCTTC 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9154845882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5