BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926698
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73250.1 | Symbols: ATFX, GER1 | GDP-4-keto-6-deoxymannose-3... 1531 0.0
AT1G17890.1 | Symbols: GER2 | NAD(P)-binding Rossmann-fold supe... 857 0.0
> AT1G73250.1 | Symbols: ATFX, GER1 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
1 | chr1:27545006-27546435 REVERSE
LENGTH=1254
Length=1254
Score = 1531 bits (829), Expect = 0.0
Identities = 943/999 (94%), Gaps = 3/999 (0%)
Strand=Plus/Plus
Query 9 CTTTGAACGAAAATGGCGGAAACCATCGGCTCAGAGGTTTCGTCGATGTCTGGCAAATCA 68
||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 64 CTTTGAACGAAAATGGCGGAAACGATCGGCTCAGAGGTTTCGTCCATGTCTGACAAATCT 123
Query 69 GCCAAAATCTTCGTCGCTGGTCATCGCGGTTTGGTTGGATCTGCCATTGCCCGCAAGCTT 128
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 124 GCCAAAATCTTCGTCGCGGGTCATCGTGGTTTGGTTGGATCTGCCATTGTCCGCAAGCTT 183
Query 129 CAGGAACAAGGTTTCACCAATCTCGTTCTTCGAACACACGCCGAGCTTGATCTCCCCCGT 188
|||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 184 CAGGAACAAGGTTTCACCAATCTCGTTCTTAAAACACACGCCGAGCTTGATCTCACTCGT 243
Query 189 CAAGCCGATGTTGAATCCTTCTTTGCTCAAGAGAAGCCTGTTTATGTAATCCTAGCAGCA 248
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 244 CAAGCCGATGTTGAATCCTTCTTTTCTCAAGAGAAGCCAGTTTATGTAATCCTAGCAGCA 303
Query 249 GCTAAAGTTGGTGGGATTCATGCTAACAACACTTATCCTGCTGATTTCATTGGTGTCAAT 308
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 304 GCTAAAGTTGGTGGTATTCACGCTAACAACACCTATCCTGCTGATTTCATTGGTGTCAAT 363
Query 309 CTCCAGATTCAGACCAATGTGATCCACTCTGCTTACGAGCACGGCGTCAAGAAGCTTCTC 368
|||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 364 CTCCAGATTCAGACCAATGTGATCCACTCTGCATATGAGCACGGTGTGAAGAAGCTTCTC 423
Query 369 TTCCTTGGATCATCCTGCATTTACCCCAAATTTGCTCCTCAGCCAATTCCTGAGTCTGCT 428
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 424 TTCCTTGGATCATCCTGCATTTACCCTAAATTTGCTCCTCAGCCAATTCCTGAGTCTGCT 483
Query 429 TTGTTAACCGCATCGCTTGAACCAACTAATGAGTGGTATGCTATTGCTAAGATCGCAGGG 488
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 484 TTGTTAACAGCATCGCTTGAACCAACTAATGAGTGGTATGCTATTGCTAAGATCGCTGGG 543
Query 489 ATTAAGACTTGCCAGGCTTATCGGATTCAGCACGGATGGGATGCGATCTCTGGCATGCCT 548
||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 544 ATTAAGACTTGTCAGGCTTATAGGATTCAGCACGGATGGGATGCAATCTCTGGCATGCCT 603
Query 549 ACTAATCTCTATGGTCCTAATGACAATTTTCACCCGGAGAATTCTCATGTGCTTCCTGCT 608
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 ACTAATCTCTATGGTCCTAATGACAATTTCCACCCGGAGAATTCTCATGTGCTTCCTGCT 663
Query 609 CTCATGAGGAGGTTCCATGAGGCGAAAGTGAATGGAGCAGAGGAAGTTGTGGTGTGGGGT 668
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 664 CTTATGAGGAGGTTCCACGAGGCGAAAGTGAATGGAGCGGAGGAAGTTGTGGTGTGGGGT 723
Query 669 ACAGGCAGTCCGTTGAGGGAGTTCTTGCACGTGGATGATTTGGCTGATGCTTGTGTTTTC 728
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 724 ACAGGTAGTCCGTTGAGGGAGTTCTTGCATGTTGATGATTTGGCTGATGCTTGTGTTTTC 783
Query 729 TTGCTGGATCGATACAGCGGGTTGGAGCATGTTAACATAGGAAGTGGTCAAGAAGTGACG 788
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 784 TTGCTGGATCGATACAGCGGGTTGGAGCATGTTAACATTGGAAGTGGTCAAGAAGTGACT 843
Query 789 ATCAAAGAGTTGGCTGAGCTGGTGAAGGAAGTCGTCGGTTTTGAAGGTAAGCTTGGATGG 848
|| | ||||||||||||| ||||||| || || || ||||||||||| ||||||||||||
Sbjct 844 ATTAGAGAGTTGGCTGAGTTGGTGAAAGAGGTTGTTGGTTTTGAAGGGAAGCTTGGATGG 903
Query 849 GATAT-CACTAAGCCAGATGGGACACCGAGGAAACTGATGGACAGCTCAAAGCTCGCGTC 907
||| | ||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 904 GAT-TGCACTAAGCCAGATGGCACACCGAGGAAACTTATGGACAGCTCAAAGCTCGCGTC 962
Query 908 TTTGGGTTGGACACCCAAGGTTTCTCTCAGAGATGGTCTTCGCCAAACATATGATTGGTA 967
||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 963 TTTGGGTTGGACACCTAAGGTTTCTCTTAGAGATGGTCTGAGCCAAACTTATGATTGGTA 1022
Query 968 TTTGAAGAATGTGTGCAGCCAATAAGT-AATGGTTTCTC 1005
|||||||||||| |||| || |||||| |||||||||||
Sbjct 1023 TTTGAAGAATGTTTGCAACCGATAAGTTAATGGTTTCTC 1061
> AT1G17890.1 | Symbols: GER2 | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:6154268-6155752 REVERSE LENGTH=1353
Length=1353
Score = 857 bits (464), Expect = 0.0
Identities = 783/936 (84%), Gaps = 25/936 (3%)
Strand=Plus/Plus
Query 63 AAATCAGCCAAAATCTTCGTCGCTGGTCATCGCGGTTTGGTTGGATCTGCCATTGCCCGC 122
||||| ||||| ||||| |||||||| ||| | || ||||||||||||||||||| ||||
Sbjct 208 AAATCCGCCAAGATCTTTGTCGCTGGACATAGGGGATTGGTTGGATCTGCCATTGTCCGC 267
Query 123 AAGCTTCAGGAACAAGGTTTCACCAATCTCGTTCTTCGAACACACGCCGAGCTTGATCTC 182
||||| ||||| || |||||||||||| | || |||||||| || | ||||||||||||
Sbjct 268 AAGCTCCAGGATCAGGGTTTCACCAATTTGGTCCTTCGAACCCATTCAGAGCTTGATCTC 327
Query 183 CCCCGTCAAGCCGATGTTGAATCCTTCTTTGCTCA-AGAGAAGCCTGTTTATGTAATCCT 241
| | ||| | ||||||||||| ||||||||| | |||||| || |||||||| |||||
Sbjct 328 ACTAGCCAATCAGATGTTGAATCTTTCTTTGCT-ACAGAGAAACCAGTTTATGTCATCCT 386
Query 242 AGCAGCAGCTAAAGTTGGTGGGATTCATGCTAACAACACTTATCCTGCTGATTTCATTGG 301
||| || |||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 387 AGCTGCTGCTAAAGTCGGTGGGATTCATGCTAACAACACATACCCAGCTGATTTCATTGG 446
Query 302 TGTCAATCTCCAGATTCAGACCAATGTGATCCACTCTGC-T-TACGAGCACGGCGTCAAG 359
||||||||||| || ||||||||||||||||||||||| | ||| | ||||| || |||
Sbjct 447 GGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGCTTATAC-A-CACGGTGTGAAG 504
Query 360 AAGCTTCTCTTCCTTGGATCATCCTGCATTTACCCCAAATTTGCTCCTCAGCCAATTCCT 419
|| || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 505 AAACTCCTCTTCCTTGGTTCATCTTGCATTTACCCCAAATTTGCTCCTCAGCCGATTCCC 564
Query 420 GAGTCTGC-TTTGTTAACCGCAT-CGCTTGAACCAACTAATGAGTGGTATGCTATTGCTA 477
|| ||||| || || |||| | |||| ||||| || || || |||||||| || || |
Sbjct 565 GAATCTGCGCTTCTT-ACCG-GTCCGCTCGAACCGACAAACGAATGGTATGCGATCGCCA 622
Query 478 AGATCGCAGGG-ATTAAGACT-TGCCAGGCTTATCGGATTCAGCA-CGGATGGGATGCGA 534
||||||| ||| ||||||| | || || ||||| ||| ||||||| | | |||||||| |
Sbjct 623 AGATCGC-GGGTATTAAGA-TGTGTCAAGCTTACCGGCTTCAGCATCAG-TGGGATGCTA 679
Query 535 TCTCTGGCATGCCTACTAATCTCTATGGTCCTAATGACAATTTTCACCCGGAGAATTCTC 594
|||| || ||||| || ||||| ||||||| ||||| ||||| |||||||||||||| |
Sbjct 680 TCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGATAATTTCCACCCGGAGAATTCCC 739
Query 595 ATGTGCTTCCTGCTCTCATGAGGAGGTTCCATGAGGCGAAAGTGAATGGA-GCAGAGGAA 653
||||||| |||||||||||||||||||| ||||| || |||| ||| | || || |||
Sbjct 740 ATGTGCTGCCTGCTCTCATGAGGAGGTTTCATGAAGCCAAAGCCAAT-AATGCTGACGAA 798
Query 654 GTTGTGGTGTGGGGTACAGGCAGTCCGTTGAGGGAGTTCTTGCACGTGGATGATTTGGCT 713
|||||||| ||||| | || || |||||||||||||| || || || ||||||||||||
Sbjct 799 GTTGTGGTTTGGGGAAGTGGAAGCCCGTTGAGGGAGTTTTTACATGTCGATGATTTGGCT 858
Query 714 GATGCTTGTGTTTTCTTGCTGGATC-GATACAGCGGGTTGGAGCATGTTAACATAGGAAG 772
|||||||||||||||||| |||||| | |||||||| || |||||||| || |||||||
Sbjct 859 GATGCTTGTGTTTTCTTGATGGATCAG-TACAGCGGATTTGAGCATGTGAATGTAGGAAG 917
Query 773 TGGTCAAGAAGTGACGATCAAAGAGTTGGCTGAGCTGGTGAAGGAAGTCGTCGGTTTTGA 832
|||| ||||||||||||||||| ||||||||| ||||||| ||||| || || ||| |
Sbjct 918 TGGTGTTGAAGTGACGATCAAAGAATTGGCTGAGTTGGTGAAAGAAGTTGTTGGGTTTAA 977
Query 833 AGGTAAGCTTGGATGGGATATCACTAAGCCAGATGGGACACCGAGGAAACTGATGGACAG 892
||| ||||||| ||||||| ||| || ||||| |||||||| |||||||||||||| ||
Sbjct 978 AGGAAAGCTTGTTTGGGATACCACAAAACCAGACGGGACACCAAGGAAACTGATGGATAG 1037
Query 893 CTCAAAGCTCGCGTCTTTGGGTTGGACACCCAAGGTTTCTCTCAGAGATGGTCT-TCGCC 951
||| ||||| ||||||||||| |||||||| ||| |||| || | |||||| || || ||
Sbjct 1038 CTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTCGCTTAAAGATGGCCTCTC-CC 1096
Query 952 AAACATATGATTGGTATTTG-AAGAATGT-GTGCAG 985
|||| ||||| ||||||||| || ||||| ||||||
Sbjct 1097 AAACTTATGAATGGTATTTGGAA-AATGTTGTGCAG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5